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The map label for this gene is rbsC [H]

Identifier: 138895466

GI number: 138895466

Start: 1925299

End: 1926288

Strand: Reverse

Name: rbsC [H]

Synonym: GTNG_1814

Alternate gene names: 138895466

Gene position: 1926288-1925299 (Counterclockwise)

Preceding gene: 138895467

Following gene: 138895465

Centisome position: 54.26

GC content: 44.55

Gene sequence:

>990_bases
ATGAGTCAAGTGGTAGTGAAAACAAAAAATGAAGTAATGAATGGCACGCTTAAGCGGGTGTTAAGCAAGTTTGGACCACT
GATCGGCCTCATCTTGTTAATCATGGTGCTGACGGTCCTATCTCCTAAATTCTTAACGGTCAATAATGTAATGAATATCG
CTCGCCAGTCGTCCATCAATGCTCTATTGGCAATTGGTATGCTTCTTCCGATATTAACAGCAGGGATTGATTTGTCTGTC
GGTTCATTGCTCGCCCTTTCGATTATGATGATGGGGATTGTTACTGTAAACATGGGAATGTCCCCGTTTTTAGGGATTTT
AGTTTGTCTCGCAGTTGGTGCAGGGTTCGGCTGGTTGAATGGTATTTTATTAACGAAATTACGTTTGCCACATCCGTTTA
TTTCAACGCTCGGTACGATGAATATTGCTCGGGGTATAGCTCTCATCGTTACGGGAGCAGCTCCAATTGCCGGTTTTCCT
TATGCCATTCAATTTCTTGGTCGTGAATTCGTTGGTCCGATTCCGGTGAGCTTTTTGCTTGTCATCGTGGTGTATGTGAT
CTTCCATATTTTCTTAACGAGAACACAGACAGGGCGTTATATTTATGCCATTGGGGGGAATCCAGAAGCTGCCCGTCTGT
CAGGTATCAATGTGGATCGAGTATTAATTATTGTCTATACCATCAGCGGCTTAATGGCGGGACTTGCCGGTCTCGTTATG
GTTGGACGTGTTAACTCTGCTTTCCCTCTTGCCGGCCTTTCTTATGAACTTGATGCGATTGCAGCTGTGATTATTGGAGG
CGCCAGTTTCATGGGCGGGGTTGGCACTGTATGGGGGACATTAATTGGTGCCTTGATTATTGCGGTTCTCAGAAATGGAC
TTAACCTTTTGAACGTCCCAGCTGATTTCCAAATGACCGTAATCGGAACGGTAATCATTGCCGCTGTATTTGTAGATGTT
CTTCGACAACGGAAGAGCAAAAAGGCTTAA

Upstream 100 bases:

>100_bases
TCCTTGTCATGAGAGAAGGCAAAATAACCGCCGATTTACCGATTGGGGAGGCTACTCAAGAACGGATTATGAAAGCGGCT
ACAGGAGCGTGAGAATAGGT

Downstream 100 bases:

>100_bases
ATACCATTTTCGCTAGGGCAAAAAAATGGAAAATGAGGAGGTTTTATTTTATGATAAAAAAGAAAACAAAGTTGTTCAGC
ACAGCAGTTGTCTTAACTTG

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSQVVVKTKNEVMNGTLKRVLSKFGPLIGLILLIMVLTVLSPKFLTVNNVMNIARQSSINALLAIGMLLPILTAGIDLSV
GSLLALSIMMMGIVTVNMGMSPFLGILVCLAVGAGFGWLNGILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFP
YAIQFLGREFVGPIPVSFLLVIVVYVIFHIFLTRTQTGRYIYAIGGNPEAARLSGINVDRVLIIVYTISGLMAGLAGLVM
VGRVNSAFPLAGLSYELDAIAAVIIGGASFMGGVGTVWGTLIGALIIAVLRNGLNLLNVPADFQMTVIGTVIIAAVFVDV
LRQRKSKKA

Sequences:

>Translated_329_residues
MSQVVVKTKNEVMNGTLKRVLSKFGPLIGLILLIMVLTVLSPKFLTVNNVMNIARQSSINALLAIGMLLPILTAGIDLSV
GSLLALSIMMMGIVTVNMGMSPFLGILVCLAVGAGFGWLNGILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFP
YAIQFLGREFVGPIPVSFLLVIVVYVIFHIFLTRTQTGRYIYAIGGNPEAARLSGINVDRVLIIVYTISGLMAGLAGLVM
VGRVNSAFPLAGLSYELDAIAAVIIGGASFMGGVGTVWGTLIGALIIAVLRNGLNLLNVPADFQMTVIGTVIIAAVFVDV
LRQRKSKKA
>Mature_328_residues
SQVVVKTKNEVMNGTLKRVLSKFGPLIGLILLIMVLTVLSPKFLTVNNVMNIARQSSINALLAIGMLLPILTAGIDLSVG
SLLALSIMMMGIVTVNMGMSPFLGILVCLAVGAGFGWLNGILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFPY
AIQFLGREFVGPIPVSFLLVIVVYVIFHIFLTRTQTGRYIYAIGGNPEAARLSGINVDRVLIIVYTISGLMAGLAGLVMV
GRVNSAFPLAGLSYELDAIAAVIIGGASFMGGVGTVWGTLIGALIIAVLRNGLNLLNVPADFQMTVIGTVIIAAVFVDVL
RQRKSKKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=45.1612903225806, Blast_Score=217, Evalue=9e-58,
Organism=Escherichia coli, GI1790524, Length=310, Percent_Identity=42.5806451612903, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=34.5679012345679, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=32.0512820512821, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=51.4925373134328, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87082395, Length=259, Percent_Identity=37.0656370656371, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=36.3914373088685, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=31.4285714285714, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787794, Length=308, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693214, Length=258, Percent_Identity=34.4961240310078, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34659; Mature: 34528

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVVVKTKNEVMNGTLKRVLSKFGPLIGLILLIMVLTVLSPKFLTVNNVMNIARQSSIN
CCCEEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
ALLAIGMLLPILTAGIDLSVGSLLALSIMMMGIVTVNMGMSPFLGILVCLAVGAGFGWLN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
GILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFPYAIQFLGREFVGPIPVSFLL
HHHHHHHCCCCHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHH
VIVVYVIFHIFLTRTQTGRYIYAIGGNPEAARLSGINVDRVLIIVYTISGLMAGLAGLVM
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VGRVNSAFPLAGLSYELDAIAAVIIGGASFMGGVGTVWGTLIGALIIAVLRNGLNLLNVP
HHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECC
ADFQMTVIGTVIIAAVFVDVLRQRKSKKA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQVVVKTKNEVMNGTLKRVLSKFGPLIGLILLIMVLTVLSPKFLTVNNVMNIARQSSIN
CCEEEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
ALLAIGMLLPILTAGIDLSVGSLLALSIMMMGIVTVNMGMSPFLGILVCLAVGAGFGWLN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
GILLTKLRLPHPFISTLGTMNIARGIALIVTGAAPIAGFPYAIQFLGREFVGPIPVSFLL
HHHHHHHCCCCHHHHHHHHHHHHCCHHEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHH
VIVVYVIFHIFLTRTQTGRYIYAIGGNPEAARLSGINVDRVLIIVYTISGLMAGLAGLVM
HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VGRVNSAFPLAGLSYELDAIAAVIIGGASFMGGVGTVWGTLIGALIIAVLRNGLNLLNVP
HHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECC
ADFQMTVIGTVIIAAVFVDVLRQRKSKKA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]