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The map label for this gene is araD [H]

Identifier: 138895449

GI number: 138895449

Start: 1903291

End: 1903977

Strand: Reverse

Name: araD [H]

Synonym: GTNG_1797

Alternate gene names: 138895449

Gene position: 1903977-1903291 (Counterclockwise)

Preceding gene: 138895450

Following gene: 138895448

Centisome position: 53.63

GC content: 52.26

Gene sequence:

>687_bases
ATGCTTGAGGAGCTGAAACGGGCTGTATTTGAGGCCAACCTGCAGCTCCCACAATACCGCCTTGTGACATTTACATGGGG
AAATGTGAGCGGGATTGACCGGGAGCGCGGGTTGGTTGTCATTAAGCCAAGTGGGTTGGCGTATGACAGACTGACTGCGG
AAGATATGGTGGTCGTGAATTTAGACGGCGAGGTGGTGGAAGGAGAGTGGAAACCGTCATCGGACACTCCGACCCATCTC
TGGCTGTATAAACAATTTCCGGGAATCGGAGGAATTGTGCATACCCATTCGACTTGGGCGACTGTTTGGGCGCAGGCCGG
GAAAGGGATTCCTCCGTTGGGGACGACGCATGCCGACTATTTTTATGGCGAAATCCCGTGCACTCGGCCGATGACCAATG
AGGAAATTCAAGGGGAATATGAACTCGAAACCGGCAAAGTGATCACCGAAACGTTCCGCTTCCTCGACCCATTGCAAGTG
CCAGGCGTTTTGGTGCATGGCCATGGACCATTTGCCTGGGGAAAAGATCCAGCAAACGCAGTCCACAATGCCGTCGTTTT
GGAAGAAGTGGCGAAAATGGCGGCAAGAACGTACATGCTCAATCCAAATGCACAGCCGATCAGCCAGTCGCTGCTTGACC
GTCATTATTTACGCAAGCATGGTGTAAACGCTTACTATGGACAATAA

Upstream 100 bases:

>100_bases
GAAATATAAAAATATGTCCAAAATACAGAAAAAAGTATGGAAAAATTGTACGTACAAAATTATAATGGAGGTGAAGAGAC
TTTTATAGGGAGTGGGAGTT

Downstream 100 bases:

>100_bases
GGGAGGGAGACTGCGATGGGGAAAAAGTACGTCATCGGTATTGACTATGGGACGGAATCGGGGCGCGCAGTTCTCGTTGA
TCTAGAGGGAAACGAAATTG

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLEELKRAVFEANLQLPQYRLVTFTWGNVSGIDRERGLVVIKPSGLAYDRLTAEDMVVVNLDGEVVEGEWKPSSDTPTHL
WLYKQFPGIGGIVHTHSTWATVWAQAGKGIPPLGTTHADYFYGEIPCTRPMTNEEIQGEYELETGKVITETFRFLDPLQV
PGVLVHGHGPFAWGKDPANAVHNAVVLEEVAKMAARTYMLNPNAQPISQSLLDRHYLRKHGVNAYYGQ

Sequences:

>Translated_228_residues
MLEELKRAVFEANLQLPQYRLVTFTWGNVSGIDRERGLVVIKPSGLAYDRLTAEDMVVVNLDGEVVEGEWKPSSDTPTHL
WLYKQFPGIGGIVHTHSTWATVWAQAGKGIPPLGTTHADYFYGEIPCTRPMTNEEIQGEYELETGKVITETFRFLDPLQV
PGVLVHGHGPFAWGKDPANAVHNAVVLEEVAKMAARTYMLNPNAQPISQSLLDRHYLRKHGVNAYYGQ
>Mature_228_residues
MLEELKRAVFEANLQLPQYRLVTFTWGNVSGIDRERGLVVIKPSGLAYDRLTAEDMVVVNLDGEVVEGEWKPSSDTPTHL
WLYKQFPGIGGIVHTHSTWATVWAQAGKGIPPLGTTHADYFYGEIPCTRPMTNEEIQGEYELETGKVITETFRFLDPLQV
PGVLVHGHGPFAWGKDPANAVHNAVVLEEVAKMAARTYMLNPNAQPISQSLLDRHYLRKHGVNAYYGQ

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=227, Percent_Identity=66.079295154185, Blast_Score=323, Evalue=5e-90,
Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=67.0995670995671, Blast_Score=317, Evalue=6e-88,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=64.5021645021645, Blast_Score=300, Evalue=7e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25484; Mature: 25484

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEELKRAVFEANLQLPQYRLVTFTWGNVSGIDRERGLVVIKPSGLAYDRLTAEDMVVVN
CHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCCCEEEEE
LDGEVVEGEWKPSSDTPTHLWLYKQFPGIGGIVHTHSTWATVWAQAGKGIPPLGTTHADY
CCCEEEECCCCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCE
FYGEIPCTRPMTNEEIQGEYELETGKVITETFRFLDPLQVPGVLVHGHGPFAWGKDPANA
EEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
VHNAVVLEEVAKMAARTYMLNPNAQPISQSLLDRHYLRKHGVNAYYGQ
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLEELKRAVFEANLQLPQYRLVTFTWGNVSGIDRERGLVVIKPSGLAYDRLTAEDMVVVN
CHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCCCEEEEE
LDGEVVEGEWKPSSDTPTHLWLYKQFPGIGGIVHTHSTWATVWAQAGKGIPPLGTTHADY
CCCEEEECCCCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCCE
FYGEIPCTRPMTNEEIQGEYELETGKVITETFRFLDPLQVPGVLVHGHGPFAWGKDPANA
EEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
VHNAVVLEEVAKMAARTYMLNPNAQPISQSLLDRHYLRKHGVNAYYGQ
HHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA