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The map label for this gene is araR [H]

Identifier: 138895450

GI number: 138895450

Start: 1904069

End: 1905163

Strand: Reverse

Name: araR [H]

Synonym: GTNG_1798

Alternate gene names: 138895450

Gene position: 1905163-1904069 (Counterclockwise)

Preceding gene: 138895451

Following gene: 138895449

Centisome position: 53.66

GC content: 45.75

Gene sequence:

>1095_bases
ATGAAGGAGAAAATGGTGCCAAAATATGTGCAATTAAAGCAAGAAATTTTATCTTGGATCGTGTCTGGAAAAATGAAGCC
GGATGAGAAAATTCCAACTGAGCATGAAATCGCCAACCAGTTTCAGTTAAGTCGTCATACGGTTCGGCAGGCGCTCGGGG
AGCTCGAGAAGGAAGGGTGGCTGTACAAAATTCAAGGGAGCGGCACATTTGTGTCCCGGCCGAAGTCAAAAGAACAAGTG
GATACGAAAACCATTGGGATCATCACTACTTATATTTCCGACTATATTTTTCCGCATATTGTCCGCGGGGCGGAGGAGAC
GTTGCGGGAAAAGGGATACCGTCTTTTGCTGGCCAGTACGAATAATGATAAACAGCGAGAGAAAGAGCAGCTTGAGGAGA
TGATTCGAGAACCATTAAGTGGGTTGATCATCGAGCCAACCAAAAGTGCACAAGGGAATCCGAACCTAGGCTACTACTTG
TCGCTCAATAACCTCCATATTCCGTATGTCATGATTAACGCTCGCTATTTGGAAGTGAGCTGTCCATGCGTGAAAATGGA
TGATGAGCAGGGCGGATTTTTATTGACCGATCATCTTATTCGTTTAGGGCACCGCCGGATTGCTGGTTTCTTTAAAACCG
ACGATTTGCAAGGAGTGGACCGTTTGCGCGGCTTTATTCGCGCTCACCAGCAACACGAGATGCCTGTTGCAACAGACTAT
CTTCTTTCTTATGCAACAGAGGAGAAAATGACAAAACCGCTTGAGGTGGCAAGACAGTTTTTGCAACGCCCAAAAGGGGA
GCGACCAACTGCCTTTGTCTGCTATAACGATGAGCTGGCGATTTTACTTCTTGAGGTGATTCGTCAACAAGGATTATCCG
TTCCTGATGACCTTTCGATCGTCGGGTTTGATGACTCGACGTTTGCGACAGCGACGGAAGTGAAGTTAACGACGATCCGT
CATCCAAAAATGGAAATGGGGATCGAAGCAGCGCAACTGCTTATTCAAATGATCGAACAGCCAACGGCTGAAACGATCAG
GGATATTATTTATAAACCTGAGTTAATTGTCCGGAACTCTACTAAAGAAATATAA

Upstream 100 bases:

>100_bases
CAATCTGCTTGGCCCTTTGTTATTAAAAATAGATACGAACAAATGAGAATTGCTATAATAAAATTAATTTGTATCTCATT
TTTGTCGTTGAGGTGGACTT

Downstream 100 bases:

>100_bases
AAATATGTCCAAAATACAGAAAAAAGTATGGAAAAATTGTACGTACAAAATTATAATGGAGGTGAAGAGACTTTTATAGG
GAGTGGGAGTTATGCTTGAG

Product: AraR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKEKMVPKYVQLKQEILSWIVSGKMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGWLYKIQGSGTFVSRPKSKEQV
DTKTIGIITTYISDYIFPHIVRGAEETLREKGYRLLLASTNNDKQREKEQLEEMIREPLSGLIIEPTKSAQGNPNLGYYL
SLNNLHIPYVMINARYLEVSCPCVKMDDEQGGFLLTDHLIRLGHRRIAGFFKTDDLQGVDRLRGFIRAHQQHEMPVATDY
LLSYATEEKMTKPLEVARQFLQRPKGERPTAFVCYNDELAILLLEVIRQQGLSVPDDLSIVGFDDSTFATATEVKLTTIR
HPKMEMGIEAAQLLIQMIEQPTAETIRDIIYKPELIVRNSTKEI

Sequences:

>Translated_364_residues
MKEKMVPKYVQLKQEILSWIVSGKMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGWLYKIQGSGTFVSRPKSKEQV
DTKTIGIITTYISDYIFPHIVRGAEETLREKGYRLLLASTNNDKQREKEQLEEMIREPLSGLIIEPTKSAQGNPNLGYYL
SLNNLHIPYVMINARYLEVSCPCVKMDDEQGGFLLTDHLIRLGHRRIAGFFKTDDLQGVDRLRGFIRAHQQHEMPVATDY
LLSYATEEKMTKPLEVARQFLQRPKGERPTAFVCYNDELAILLLEVIRQQGLSVPDDLSIVGFDDSTFATATEVKLTTIR
HPKMEMGIEAAQLLIQMIEQPTAETIRDIIYKPELIVRNSTKEI
>Mature_364_residues
MKEKMVPKYVQLKQEILSWIVSGKMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGWLYKIQGSGTFVSRPKSKEQV
DTKTIGIITTYISDYIFPHIVRGAEETLREKGYRLLLASTNNDKQREKEQLEEMIREPLSGLIIEPTKSAQGNPNLGYYL
SLNNLHIPYVMINARYLEVSCPCVKMDDEQGGFLLTDHLIRLGHRRIAGFFKTDDLQGVDRLRGFIRAHQQHEMPVATDY
LLSYATEEKMTKPLEVARQFLQRPKGERPTAFVCYNDELAILLLEVIRQQGLSVPDDLSIVGFDDSTFATATEVKLTTIR
HPKMEMGIEAAQLLIQMIEQPTAETIRDIIYKPELIVRNSTKEI

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=358, Percent_Identity=28.7709497206704, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789202, Length=298, Percent_Identity=26.8456375838926, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790194, Length=280, Percent_Identity=30, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787948, Length=286, Percent_Identity=27.6223776223776, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788474, Length=271, Percent_Identity=25.830258302583, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789068, Length=273, Percent_Identity=27.1062271062271, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787906, Length=289, Percent_Identity=25.9515570934256, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI48994940, Length=272, Percent_Identity=22.7941176470588, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790715, Length=262, Percent_Identity=22.5190839694656, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41761; Mature: 41761

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKMVPKYVQLKQEILSWIVSGKMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGW
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
LYKIQGSGTFVSRPKSKEQVDTKTIGIITTYISDYIFPHIVRGAEETLREKGYRLLLAST
EEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NNDKQREKEQLEEMIREPLSGLIIEPTKSAQGNPNLGYYLSLNNLHIPYVMINARYLEVS
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCEECCEEEEEEEEEEEE
CPCVKMDDEQGGFLLTDHLIRLGHRRIAGFFKTDDLQGVDRLRGFIRAHQQHEMPVATDY
CCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
LLSYATEEKMTKPLEVARQFLQRPKGERPTAFVCYNDELAILLLEVIRQQGLSVPDDLSI
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEE
VGFDDSTFATATEVKLTTIRHPKMEMGIEAAQLLIQMIEQPTAETIRDIIYKPELIVRNS
EECCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECC
TKEI
CCCC
>Mature Secondary Structure
MKEKMVPKYVQLKQEILSWIVSGKMKPDEKIPTEHEIANQFQLSRHTVRQALGELEKEGW
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
LYKIQGSGTFVSRPKSKEQVDTKTIGIITTYISDYIFPHIVRGAEETLREKGYRLLLAST
EEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
NNDKQREKEQLEEMIREPLSGLIIEPTKSAQGNPNLGYYLSLNNLHIPYVMINARYLEVS
CCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEECCEECCEEEEEEEEEEEE
CPCVKMDDEQGGFLLTDHLIRLGHRRIAGFFKTDDLQGVDRLRGFIRAHQQHEMPVATDY
CCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
LLSYATEEKMTKPLEVARQFLQRPKGERPTAFVCYNDELAILLLEVIRQQGLSVPDDLSI
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEE
VGFDDSTFATATEVKLTTIRHPKMEMGIEAAQLLIQMIEQPTAETIRDIIYKPELIVRNS
EECCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECC
TKEI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA