Click here to switch to the map view.

The map label for this gene is ydiB [H]

Identifier: 138893887

GI number: 138893887

Start: 231482

End: 231940

Strand: Direct

Name: ydiB [H]

Synonym: GTNG_0211

Alternate gene names: 138893887

Gene position: 231482-231940 (Clockwise)

Preceding gene: 138893886

Following gene: 138893888

Centisome position: 6.52

GC content: 47.49

Gene sequence:

>459_bases
ATGGAGCAGTTGGAACTTATAGTGCATTCCCCTAAAGAGACAAAGGAGATCGCCCGACGACTAGCGGAACAGCTTGAGCC
AGGAATGGTCATCGCCTTGGAAGGCGATTTAGGTGCAGGAAAGACGACATTTACGAAAGGGATTGCTGAAGGGCTAGGTA
TTACACAAAATGTCAACAGTCCGACGTTTACGATTATTAAGCAATACGAGGGGAGACTCCCGCTTTACCATATGGATGTG
TACCGTCTTGAGGACGAGTGGGAAGACCTTGGGTTTGATGAATATTTTGCCGGCGATGGCGTTACAGTCGTTGAATGGGC
GCATTTGATTGCAGGTCAGCTGCCGAACGAGCGGTTGACGGTTCATTTGTATCACCATGGCGATAGTGAACGAAAATTAG
TGTTTGAACCGTTAGGGCAGCGTTACGAACAGTTATGTAAGGAGATTTTTGCGTCATGA

Upstream 100 bases:

>100_bases
AATCTCGTTTTTGACGTTGAAAGTGGCAACATGATGTTTTGTTATGGTACAATTTCAAAAGCGAGAGTGAAGATGATAAA
ATGGAATAAGGTGGAACGTG

Downstream 100 bases:

>100_bases
AGATATTAGGAATTGATACTTCAAATATGCCATTGGGTATTGCCTTGATGGATGGGAATGTCATTAAAGGGGAAATCATC
ACGAATGTGAAAAAAGATCA

Product: ATP/GTP hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MEQLELIVHSPKETKEIARRLAEQLEPGMVIALEGDLGAGKTTFTKGIAEGLGITQNVNSPTFTIIKQYEGRLPLYHMDV
YRLEDEWEDLGFDEYFAGDGVTVVEWAHLIAGQLPNERLTVHLYHHGDSERKLVFEPLGQRYEQLCKEIFAS

Sequences:

>Translated_152_residues
MEQLELIVHSPKETKEIARRLAEQLEPGMVIALEGDLGAGKTTFTKGIAEGLGITQNVNSPTFTIIKQYEGRLPLYHMDV
YRLEDEWEDLGFDEYFAGDGVTVVEWAHLIAGQLPNERLTVHLYHHGDSERKLVFEPLGQRYEQLCKEIFAS
>Mature_152_residues
MEQLELIVHSPKETKEIARRLAEQLEPGMVIALEGDLGAGKTTFTKGIAEGLGITQNVNSPTFTIIKQYEGRLPLYHMDV
YRLEDEWEDLGFDEYFAGDGVTVVEWAHLIAGQLPNERLTVHLYHHGDSERKLVFEPLGQRYEQLCKEIFAS

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=115, Percent_Identity=41.7391304347826, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 17288; Mature: 17288

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLELIVHSPKETKEIARRLAEQLEPGMVIALEGDLGAGKTTFTKGIAEGLGITQNVNS
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC
PTFTIIKQYEGRLPLYHMDVYRLEDEWEDLGFDEYFAGDGVTVVEWAHLIAGQLPNERLT
CCEEEEECCCCCCCEEEHHEEEECCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCCCCEE
VHLYHHGDSERKLVFEPLGQRYEQLCKEIFAS
EEEEECCCCCCEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQLELIVHSPKETKEIARRLAEQLEPGMVIALEGDLGAGKTTFTKGIAEGLGITQNVNS
CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCC
PTFTIIKQYEGRLPLYHMDVYRLEDEWEDLGFDEYFAGDGVTVVEWAHLIAGQLPNERLT
CCEEEEECCCCCCCEEEHHEEEECCHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCCCCEE
VHLYHHGDSERKLVFEPLGQRYEQLCKEIFAS
EEEEECCCCCCEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]