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The map label for this gene is ydiC [H]

Identifier: 138893888

GI number: 138893888

Start: 231937

End: 232677

Strand: Direct

Name: ydiC [H]

Synonym: GTNG_0212

Alternate gene names: 138893888

Gene position: 231937-232677 (Clockwise)

Preceding gene: 138893887

Following gene: 138893889

Centisome position: 6.53

GC content: 50.2

Gene sequence:

>741_bases
ATGAAGATATTAGGAATTGATACTTCAAATATGCCATTGGGTATTGCCTTGATGGATGGGAATGTCATTAAAGGGGAAAT
CATCACGAATGTGAAAAAAGATCACTCAGCCCGGGCGATGCCGGCCATTGAATCGTTGCTTCGGCAGTGTGGGATTACCC
CAGACGAGCTTGATTTGATCGTTGTTGCTAAAGGACCGGGATCATATACAGGGGTGCGGATCGGTGTAACGATTGCGAAA
ACGCTTGCTTGGTCGCTAGGCATCCCGATTGCCGGCGTTTCGAGCCTCGAAGTGCTCGCCGCTAATGGCCGTTATTTTCC
CGGAGTGATCGTTCCGCTATTTGATGCGCGGCGCGGACAAATTTATACTGGTCTTTATCGTTATGAAGGCGGTGTGCTCC
GCTGCCTTGAGGAGGACCGGATTGTCGCTGCTGATGAGTGGGCTCATCAGTTAAGTCAGCAGGGAGAGGATGTATTGTTA
GTTGGTGTGGATGCGCCGTTATATAGTGAACTGTTTCGAAATCATTTAGGCGAGCGCGTTCATGTTGCCCCACCATCGTT
GGCGTTGCCGCGCCCGAGTGAGTTAGTTATGCTTGGAAAAGAAAAAGAACGCGAGAACGCCCATGCGTTTGTGCCGAATT
ATATCCGTCTTGCCGAAGCGGAGGCGAAATGGCTCGCGAAACAAAAAGGGGAAGGAACCGATGGGGATCGATGTACAATT
TCGTCCAATGACCATCCATGA

Upstream 100 bases:

>100_bases
TGACGGTTCATTTGTATCACCATGGCGATAGTGAACGAAAATTAGTGTTTGAACCGTTAGGGCAGCGTTACGAACAGTTA
TGTAAGGAGATTTTTGCGTC

Downstream 100 bases:

>100_bases
CATTGACGAGGTCGTACAAGTAGAACGGGCGTCGTTCACCGCACCGTGGAGCCGCGAGTCGTTTTATAATGAGCTGATGT
ACAATCGTTATGCCAAATAT

Product: glycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKILGIDTSNMPLGIALMDGNVIKGEIITNVKKDHSARAMPAIESLLRQCGITPDELDLIVVAKGPGSYTGVRIGVTIAK
TLAWSLGIPIAGVSSLEVLAANGRYFPGVIVPLFDARRGQIYTGLYRYEGGVLRCLEEDRIVAADEWAHQLSQQGEDVLL
VGVDAPLYSELFRNHLGERVHVAPPSLALPRPSELVMLGKEKERENAHAFVPNYIRLAEAEAKWLAKQKGEGTDGDRCTI
SSNDHP

Sequences:

>Translated_246_residues
MKILGIDTSNMPLGIALMDGNVIKGEIITNVKKDHSARAMPAIESLLRQCGITPDELDLIVVAKGPGSYTGVRIGVTIAK
TLAWSLGIPIAGVSSLEVLAANGRYFPGVIVPLFDARRGQIYTGLYRYEGGVLRCLEEDRIVAADEWAHQLSQQGEDVLL
VGVDAPLYSELFRNHLGERVHVAPPSLALPRPSELVMLGKEKERENAHAFVPNYIRLAEAEAKWLAKQKGEGTDGDRCTI
SSNDHP
>Mature_246_residues
MKILGIDTSNMPLGIALMDGNVIKGEIITNVKKDHSARAMPAIESLLRQCGITPDELDLIVVAKGPGSYTGVRIGVTIAK
TLAWSLGIPIAGVSSLEVLAANGRYFPGVIVPLFDARRGQIYTGLYRYEGGVLRCLEEDRIVAADEWAHQLSQQGEDVLL
VGVDAPLYSELFRNHLGERVHVAPPSLALPRPSELVMLGKEKERENAHAFVPNYIRLAEAEAKWLAKQKGEGTDGDRCTI
SSNDHP

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=157, Percent_Identity=31.8471337579618, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26732; Mature: 26732

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILGIDTSNMPLGIALMDGNVIKGEIITNVKKDHSARAMPAIESLLRQCGITPDELDLI
CEEEECCCCCCCEEEEEECCCEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
VVAKGPGSYTGVRIGVTIAKTLAWSLGIPIAGVSSLEVLAANGRYFPGVIVPLFDARRGQ
EEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCC
IYTGLYRYEGGVLRCLEEDRIVAADEWAHQLSQQGEDVLLVGVDAPLYSELFRNHLGERV
EEEEEEEECCCEEEEECCCCEEEHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCEE
HVAPPSLALPRPSELVMLGKEKERENAHAFVPNYIRLAEAEAKWLAKQKGEGTDGDRCTI
EECCCCCCCCCCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
SSNDHP
CCCCCC
>Mature Secondary Structure
MKILGIDTSNMPLGIALMDGNVIKGEIITNVKKDHSARAMPAIESLLRQCGITPDELDLI
CEEEECCCCCCCEEEEEECCCEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
VVAKGPGSYTGVRIGVTIAKTLAWSLGIPIAGVSSLEVLAANGRYFPGVIVPLFDARRGQ
EEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCC
IYTGLYRYEGGVLRCLEEDRIVAADEWAHQLSQQGEDVLLVGVDAPLYSELFRNHLGERV
EEEEEEEECCCEEEEECCCCEEEHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCEE
HVAPPSLALPRPSELVMLGKEKERENAHAFVPNYIRLAEAEAKWLAKQKGEGTDGDRCTI
EECCCCCCCCCCCCEEEECCCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEE
SSNDHP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]