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The map label for this gene is dppB [H]

Identifier: 126696492

GI number: 126696492

Start: 967393

End: 968415

Strand: Reverse

Name: dppB [H]

Synonym: P9301_11541

Alternate gene names: 126696492

Gene position: 968415-967393 (Counterclockwise)

Preceding gene: 126696493

Following gene: 126696490

Centisome position: 58.98

GC content: 32.65

Gene sequence:

>1023_bases
ATGAGTAGAAATTTAAATAAACTACTAAATTATTCCTTATTAAAAATTTCATTAATACCGATAATGCTATGGATAATTTC
TTCATTAGTTTTTATTTTATTAAGAGTTGCTCCCGGCGATCCTGTGGATGCCATACTTGGATCTGGTGCAGATGAGGTTT
CTAGGGAATTTCTAAGAAATAAATTGGGGCTAAATGAACCTTTAATAAATCAATATTTTTCATATATTAAAAATATATTG
CACTTAGATTTTGGCCAATCTCTTAGTACCCAAGAGCCAGTCCTTAAAATTATTATAAAGTCATTGCCTGCAAGTCTTGA
GCTTGGATTCTTTTCAATATTAAGTGCCATAGTAATAGGATTTCCATTAGGATTAATTGGCTTAAGAAATAGAGGAAAAA
AGACTGATTATATTGCGAGAATATTAGGAATTGCTACATATGCGATCCCTCCTTTTTGGGGTGCAATGTTAGCTCAATTA
TTATTTTCTGTATTTTTTAATATTTCCCCAATTGGAGGGAGATTTCCTATATTTCAGCAACAACCTCAAATTACAGGTTT
TCTAGTTTTAGATAGTATTCTTTCAAATAATATTATTGCCTTGAAAGATAGTCTTTATCATCTCGCACTTCCTTCGATTA
CCCTTGGCTTTTTATTGAGTGGTATATTCAGCCGCTCATTAAGAGTAAATTTGGATAAGACATTAAAAAGTGATTATGTA
AATGCTGCTATATGTAGAGGAATATCGAGGAAAAAAATATTTTTAAACCATGCATTGCCTAATGCTCTATTGCCAATTGT
CACTATTTCTGGCTTGACTCTGGCCTCTTTAGCAGGAGGTGCTCTGTTGTTCGAGGTGACTTTCTCATGGCCAGGTATAG
CTTTAAGATTACATGAGGCTATTTCTCAAAGAGACTATACCTTGGTTCAAGGAATTGTAATTTTTACCTCTATGCTTATA
GTCTCTCTAAATCTCTTAGTGGATATTTTAATCGCATATTTAGATCCACGAATAGAGTACTAA

Upstream 100 bases:

>100_bases
ATTTGGATCTCCTCTCAAAAAGCATGGTCACAAAATAAAATATCAAAACCTATTTTTAATGGCGCAGGAATAATTTCATT
GAGTAATCTTGAGTTAATTA

Downstream 100 bases:

>100_bases
TTTTCGGAAATTTCTTTTATTGTTTCAAGATCTAAGAGATGGAAGTCAAGTCCCAAATCATTTTGGTTTTTAACTACATT
AGGGATCTTTTGGTCTTTAA

Product: putative ABC transporter, oligopeptides

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSRNLNKLLNYSLLKISLIPIMLWIISSLVFILLRVAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNIL
HLDFGQSLSTQEPVLKIIIKSLPASLELGFFSILSAIVIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQL
LFSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTLASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLI
VSLNLLVDILIAYLDPRIEY

Sequences:

>Translated_340_residues
MSRNLNKLLNYSLLKISLIPIMLWIISSLVFILLRVAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNIL
HLDFGQSLSTQEPVLKIIIKSLPASLELGFFSILSAIVIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQL
LFSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTLASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLI
VSLNLLVDILIAYLDPRIEY
>Mature_339_residues
SRNLNKLLNYSLLKISLIPIMLWIISSLVFILLRVAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNILH
LDFGQSLSTQEPVLKIIIKSLPASLELGFFSILSAIVIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLL
FSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYVN
AAICRGISRKKIFLNHALPNALLPIVTISGLTLASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLIV
SLNLLVDILIAYLDPRIEY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=319, Percent_Identity=34.4827586206897, Blast_Score=210, Evalue=9e-56,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=36.624203821656, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=31.7365269461078, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=31.044776119403, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.25, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=28.8819875776398, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788504, Length=381, Percent_Identity=25.9842519685039, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37552; Mature: 37421

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNLNKLLNYSLLKISLIPIMLWIISSLVFILLRVAPGDPVDAILGSGADEVSREFLRN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNEPLINQYFSYIKNILHLDFGQSLSTQEPVLKIIIKSLPASLELGFFSILSAIVIG
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLLFSVFFNISPIGGRFPIFQQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTLASLAGGALLFEVTFSWPGIALRLHEA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLLVDILIAYLDPRIEY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRNLNKLLNYSLLKISLIPIMLWIISSLVFILLRVAPGDPVDAILGSGADEVSREFLRN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNEPLINQYFSYIKNILHLDFGQSLSTQEPVLKIIIKSLPASLELGFFSILSAIVIG
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLLFSVFFNISPIGGRFPIFQQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTLASLAGGALLFEVTFSWPGIALRLHEA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLLVDILIAYLDPRIEY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]