Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126699215
Identifier: 126699215
GI number: 126699215
Start: 1864071
End: 1865339
Strand: Direct
Name: 126699215
Synonym: CD1611
Alternate gene names: NA
Gene position: 1864071-1865339 (Clockwise)
Preceding gene: 126699214
Following gene: 126699216
Centisome position: 43.45
GC content: 22.62
Gene sequence:
>1269_bases ATGAAAGCAAAAAATATAGGAAAATATACAATATGTTTTATAATAGTATGTTTTTTAATGATTACTATGACCTTAATATT GAGTTATTTTAATAAGGATAAACTATCTGTAAAAACTTTAAAAGGCAATGTAAAAGATATAGGGAGAGTAAGTGTAGTAT ATACACCTAATATAAGCAAATTTTCTTATGAGGAGGTAATTATAAGTAAAAATGGAGTAAGAAATAATACAAACCCAAAA TCAAGAATTAGAAATGATTATTTAAATATTGACAAAAAATACAGTGACTTTGTTAATGATAAAGGAAAAGAATTTATATA TAAAGATGATTTGAATATAGGAGAAGCGTATACCTCTGTTAAGTCTGATTTAGTACAAGGAATGAATGCTTTAAATGATT GTATAAAGGTTTCAAATAAAAATTTAAAAAGTGGGGTAGAAGAAAATTTTGATATTAATTTAAATAAGTCTGATTTTAAA GAAAATAGTTGGAAAACCTTATTTAACAAAATATATAAAGGTAATTTATATATGGTAATTAGTGAAACTAATATTTCAGG TTCTAAAGTCAATAATATTTGTATATTAAAGATAGATATAAAAAATAAGTCTTATAAATTATTAAATAGATTTAATTTAG GATTACAGAATGGAGAACAACAAAATATCAATGAAATTAAATTTTCTATTGGAAGTAAATTATACTTAGAAATAGTAAAT AATAAAAGTAAAAATGGATATATTGAAGGACATGATAGTTACTCTAACTTTATTATATATGATATAGAAGATAACACTTT TAATATAAGTAATAAATTTATGGATAATCTAAACAAAGAAAAGAATGCAAATCCAAAGGAGATTGGCTTATTAAGTAAAA CTAAGCTAGATTATATGGTAAAAAACAATAAATTGAATCTTATAGTTACGGATATGAGTAATTCCATAACTAATCTTGTT TATGATATTAATTCTAATGAGATTAAATTAGAAGATTATGAGATACTTGATTTAAAAGTAGATTATAATGAAGCATCATC TGGAGTTAGGAAAGTTAAGCTACTGGATGATAAGATATATTCTATTTCAGGTATTAAGAACAGTATATCAGGAGAATTAA AAGGATTTAAAGGGATTATTGATGTAGTCGGAACTAAGCCAGTAAAATTTCAAGTATTTGATATGAAACTTAAAAAGAAT ATTTATGAAGCTGAGCTAATAAATGGAGATATAAGTTTACAAGAAAAGTTATTTTTTGTTGCAAATTAA
Upstream 100 bases:
>100_bases GATGTATTTACTGTTCTATATTCAAGTATAAACATATTTGTATGTAGTCTTATATCTAATAAACTTTTGAAGCAAAAGAT TGACTTTTAGGAGGGATATT
Downstream 100 bases:
>100_bases GTGTTAGAATTAATTTTAGAACTTTAAACTTTTATATGTATCACAGATAAGTATAAGTAAGGGAGTGTCTCAAAGTAAAC TTTTTAGCTCATGAGACACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MKAKNIGKYTICFIIVCFLMITMTLILSYFNKDKLSVKTLKGNVKDIGRVSVVYTPNISKFSYEEVIISKNGVRNNTNPK SRIRNDYLNIDKKYSDFVNDKGKEFIYKDDLNIGEAYTSVKSDLVQGMNALNDCIKVSNKNLKSGVEENFDINLNKSDFK ENSWKTLFNKIYKGNLYMVISETNISGSKVNNICILKIDIKNKSYKLLNRFNLGLQNGEQQNINEIKFSIGSKLYLEIVN NKSKNGYIEGHDSYSNFIIYDIEDNTFNISNKFMDNLNKEKNANPKEIGLLSKTKLDYMVKNNKLNLIVTDMSNSITNLV YDINSNEIKLEDYEILDLKVDYNEASSGVRKVKLLDDKIYSISGIKNSISGELKGFKGIIDVVGTKPVKFQVFDMKLKKN IYEAELINGDISLQEKLFFVAN
Sequences:
>Translated_422_residues MKAKNIGKYTICFIIVCFLMITMTLILSYFNKDKLSVKTLKGNVKDIGRVSVVYTPNISKFSYEEVIISKNGVRNNTNPK SRIRNDYLNIDKKYSDFVNDKGKEFIYKDDLNIGEAYTSVKSDLVQGMNALNDCIKVSNKNLKSGVEENFDINLNKSDFK ENSWKTLFNKIYKGNLYMVISETNISGSKVNNICILKIDIKNKSYKLLNRFNLGLQNGEQQNINEIKFSIGSKLYLEIVN NKSKNGYIEGHDSYSNFIIYDIEDNTFNISNKFMDNLNKEKNANPKEIGLLSKTKLDYMVKNNKLNLIVTDMSNSITNLV YDINSNEIKLEDYEILDLKVDYNEASSGVRKVKLLDDKIYSISGIKNSISGELKGFKGIIDVVGTKPVKFQVFDMKLKKN IYEAELINGDISLQEKLFFVAN >Mature_422_residues MKAKNIGKYTICFIIVCFLMITMTLILSYFNKDKLSVKTLKGNVKDIGRVSVVYTPNISKFSYEEVIISKNGVRNNTNPK SRIRNDYLNIDKKYSDFVNDKGKEFIYKDDLNIGEAYTSVKSDLVQGMNALNDCIKVSNKNLKSGVEENFDINLNKSDFK ENSWKTLFNKIYKGNLYMVISETNISGSKVNNICILKIDIKNKSYKLLNRFNLGLQNGEQQNINEIKFSIGSKLYLEIVN NKSKNGYIEGHDSYSNFIIYDIEDNTFNISNKFMDNLNKEKNANPKEIGLLSKTKLDYMVKNNKLNLIVTDMSNSITNLV YDINSNEIKLEDYEILDLKVDYNEASSGVRKVKLLDDKIYSISGIKNSISGELKGFKGIIDVVGTKPVKFQVFDMKLKKN IYEAELINGDISLQEKLFFVAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48239; Mature: 48239
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAKNIGKYTICFIIVCFLMITMTLILSYFNKDKLSVKTLKGNVKDIGRVSVVYTPNISK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCC FSYEEVIISKNGVRNNTNPKSRIRNDYLNIDKKYSDFVNDKGKEFIYKDDLNIGEAYTSV CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHH KSDLVQGMNALNDCIKVSNKNLKSGVEENFDINLNKSDFKENSWKTLFNKIYKGNLYMVI HHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCHHHCCCCHHHHHHHHHHCCCEEEEE SETNISGSKVNNICILKIDIKNKSYKLLNRFNLGLQNGEQQNINEIKFSIGSKLYLEIVN EECCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEEEC NKSKNGYIEGHDSYSNFIIYDIEDNTFNISNKFMDNLNKEKNANPKEIGLLSKTKLDYMV CCCCCCEEECCCCCCCEEEEEECCCEEECHHHHHHCCCCCCCCCHHHCCEEECCCEEEEE KNNKLNLIVTDMSNSITNLVYDINSNEIKLEDYEILDLKVDYNEASSGVRKVKLLDDKIY ECCEEEEEEECCCCCCEEEEEECCCCEEEEECEEEEEEEEECCCCCCCCEEEEEECCCEE SISGIKNSISGELKGFKGIIDVVGTKPVKFQVFDMKLKKNIYEAELINGDISLQEKLFFV EECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEHHHCCCEEEEEECCCCEEEEEEEEE AN EC >Mature Secondary Structure MKAKNIGKYTICFIIVCFLMITMTLILSYFNKDKLSVKTLKGNVKDIGRVSVVYTPNISK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCC FSYEEVIISKNGVRNNTNPKSRIRNDYLNIDKKYSDFVNDKGKEFIYKDDLNIGEAYTSV CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHH KSDLVQGMNALNDCIKVSNKNLKSGVEENFDINLNKSDFKENSWKTLFNKIYKGNLYMVI HHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEECCHHHCCCCHHHHHHHHHHCCCEEEEE SETNISGSKVNNICILKIDIKNKSYKLLNRFNLGLQNGEQQNINEIKFSIGSKLYLEIVN EECCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEEEEC NKSKNGYIEGHDSYSNFIIYDIEDNTFNISNKFMDNLNKEKNANPKEIGLLSKTKLDYMV CCCCCCEEECCCCCCCEEEEEECCCEEECHHHHHHCCCCCCCCCHHHCCEEECCCEEEEE KNNKLNLIVTDMSNSITNLVYDINSNEIKLEDYEILDLKVDYNEASSGVRKVKLLDDKIY ECCEEEEEEECCCCCCEEEEEECCCCEEEEECEEEEEEEEECCCCCCCCEEEEEECCCEE SISGIKNSISGELKGFKGIIDVVGTKPVKFQVFDMKLKKNIYEAELINGDISLQEKLFFV EECCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEHHHCCCEEEEEECCCCEEEEEEEEE AN EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA