Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126699216
Identifier: 126699216
GI number: 126699216
Start: 1865705
End: 1866886
Strand: Direct
Name: 126699216
Synonym: CD1612
Alternate gene names: NA
Gene position: 1865705-1866886 (Clockwise)
Preceding gene: 126699215
Following gene: 126699218
Centisome position: 43.49
GC content: 32.83
Gene sequence:
>1182_bases ATGAACAAAAAATATATTAAAGCAGGGAATTTAATTGATGGAACCGGAAATAGTATTATGCAAAATAAGGGTATAATTAT TGATGGAGATACTATAGTTGAAATTGAAGATATAAGAGATGATTTAAATGGATATGATGTGTACGATTACTTAGATAAAA CTGTTATGCCAGGCATTATGAATTGTCATGTTCACTTGACAATGGAGCCAGTTGGAAATCCAAAGATATATTATGATAAT GTATCAGATGTAGAGCTTGTAGTAAATACGATAAAACAACTTGATGCTTATTTGGATTCAGGAGTAACATATATTAGAAG CTTAGGTTGTCCCAAATATGTGGATGTACAACTTAAAAATCTTATAGACAAAGGGTCTATAGATGGTCCTGGTATAGTTA CTTCAGGTCCAGTTATATGTATGACAGGAGGGCATGGATATTATTTTGGTATTGAAAGTGATGGAGTGGATGAATGTAGA AAATCAGCCAGAACAGTTTTAAAAAATGGAGTAGATTGTGTAAAGATAATGGCAACTGGAGGTGTAACAACTGATGGAGT TGAGCCAGGGTCACCACAATTAACTTTGGAGGAAATGAAGGCTGCTGTAGATGAAGCTATAAAAGCAGGTAAAATAACTG CCACACATGCACAAGGAAGAACTGGTATAAAAAATGCAGTGCTTGCAGGAATTACTTCTATAGAACATGGTGTTTATTTA GATGATGAAATAATTGATTTGATGCTTGAAAGAGGAACTTACTTAGTTCCAACTGTGGCTGCACCATATTTTATTCTAAA TGCAGGAAAAGAAAGTGGAATAACTGAAGCTACTCTTAGAAAGTGTGAGATTGTTGCCATTCCACACAAAGAGTCATTCC TAAAAGCATATAAAAAAGGAATTAAAATTGCAGTTGGTTCTGATGCAGGAACTTCTTATAATGAACATGGAAAAACATAT TATGAAATGAAACTAATGTCAGATTATGGTATGGATAATATGGATATAATAGTTGCTGCTACAAAAACAGCATCTGAACT TTTAAGAATTGATAAAAATTATGGAACTCTAGAAAAAGGAAAGAAAGCAGATGTTATAGTTGTAAATGGAAATCCAGTAG AGAATATAGACGTACTTGCAGATGTGTTAGCAGTATTTAAACTTGGTAAAAAAGTTAGATAA
Upstream 100 bases:
>100_bases AAATTTGAAATAGAATGCTTATAGTGGTAAAATTAATTATTAGAATATTAGAAATAATAAATAAATAATACATTGTACTT AAAAGGGGGAGAAATTTAAG
Downstream 100 bases:
>100_bases ATAGTATAAAAATAAAAAAGAGTGTCTAAAGAAATTTTTAAATAATTATAGACACTCTTTTTTATTAGTAATAATTAAAT CTTTTATACTTTAGAAAATA
Product: amidohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MNKKYIKAGNLIDGTGNSIMQNKGIIIDGDTIVEIEDIRDDLNGYDVYDYLDKTVMPGIMNCHVHLTMEPVGNPKIYYDN VSDVELVVNTIKQLDAYLDSGVTYIRSLGCPKYVDVQLKNLIDKGSIDGPGIVTSGPVICMTGGHGYYFGIESDGVDECR KSARTVLKNGVDCVKIMATGGVTTDGVEPGSPQLTLEEMKAAVDEAIKAGKITATHAQGRTGIKNAVLAGITSIEHGVYL DDEIIDLMLERGTYLVPTVAAPYFILNAGKESGITEATLRKCEIVAIPHKESFLKAYKKGIKIAVGSDAGTSYNEHGKTY YEMKLMSDYGMDNMDIIVAATKTASELLRIDKNYGTLEKGKKADVIVVNGNPVENIDVLADVLAVFKLGKKVR
Sequences:
>Translated_393_residues MNKKYIKAGNLIDGTGNSIMQNKGIIIDGDTIVEIEDIRDDLNGYDVYDYLDKTVMPGIMNCHVHLTMEPVGNPKIYYDN VSDVELVVNTIKQLDAYLDSGVTYIRSLGCPKYVDVQLKNLIDKGSIDGPGIVTSGPVICMTGGHGYYFGIESDGVDECR KSARTVLKNGVDCVKIMATGGVTTDGVEPGSPQLTLEEMKAAVDEAIKAGKITATHAQGRTGIKNAVLAGITSIEHGVYL DDEIIDLMLERGTYLVPTVAAPYFILNAGKESGITEATLRKCEIVAIPHKESFLKAYKKGIKIAVGSDAGTSYNEHGKTY YEMKLMSDYGMDNMDIIVAATKTASELLRIDKNYGTLEKGKKADVIVVNGNPVENIDVLADVLAVFKLGKKVR >Mature_393_residues MNKKYIKAGNLIDGTGNSIMQNKGIIIDGDTIVEIEDIRDDLNGYDVYDYLDKTVMPGIMNCHVHLTMEPVGNPKIYYDN VSDVELVVNTIKQLDAYLDSGVTYIRSLGCPKYVDVQLKNLIDKGSIDGPGIVTSGPVICMTGGHGYYFGIESDGVDECR KSARTVLKNGVDCVKIMATGGVTTDGVEPGSPQLTLEEMKAAVDEAIKAGKITATHAQGRTGIKNAVLAGITSIEHGVYL DDEIIDLMLERGTYLVPTVAAPYFILNAGKESGITEATLRKCEIVAIPHKESFLKAYKKGIKIAVGSDAGTSYNEHGKTY YEMKLMSDYGMDNMDIIVAATKTASELLRIDKNYGTLEKGKKADVIVVNGNPVENIDVLADVLAVFKLGKKVR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.coelicolor SCO1861 [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322248, Length=322, Percent_Identity=31.055900621118, Blast_Score=122, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: NA
Molecular weight: Translated: 42549; Mature: 42549
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKYIKAGNLIDGTGNSIMQNKGIIIDGDTIVEIEDIRDDLNGYDVYDYLDKTVMPGIM CCCCEEECCCEECCCCCCCCCCCCEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHCCCEE NCHVHLTMEPVGNPKIYYDNVSDVELVVNTIKQLDAYLDSGVTYIRSLGCPKYVDVQLKN EEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEHHHHHH LIDKGSIDGPGIVTSGPVICMTGGHGYYFGIESDGVDECRKSARTVLKNGVDCVKIMATG HHHCCCCCCCCEEECCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC GVTTDGVEPGSPQLTLEEMKAAVDEAIKAGKITATHAQGRTGIKNAVLAGITSIEHGVYL CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEE DDEIIDLMLERGTYLVPTVAAPYFILNAGKESGITEATLRKCEIVAIPHKESFLKAYKKG CHHHHHHHHHCCCEEEEHHHCCEEEEECCCCCCCCHHHHCEEEEEEECCHHHHHHHHHCC IKIAVGSDAGTSYNEHGKTYYEMKLMSDYGMDNMDIIVAATKTASELLRIDKNYGTLEKG CEEEECCCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCC KKADVIVVNGNPVENIDVLADVLAVFKLGKKVR CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNKKYIKAGNLIDGTGNSIMQNKGIIIDGDTIVEIEDIRDDLNGYDVYDYLDKTVMPGIM CCCCEEECCCEECCCCCCCCCCCCEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHCCCEE NCHVHLTMEPVGNPKIYYDNVSDVELVVNTIKQLDAYLDSGVTYIRSLGCPKYVDVQLKN EEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEHHHHHH LIDKGSIDGPGIVTSGPVICMTGGHGYYFGIESDGVDECRKSARTVLKNGVDCVKIMATG HHHCCCCCCCCEEECCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC GVTTDGVEPGSPQLTLEEMKAAVDEAIKAGKITATHAQGRTGIKNAVLAGITSIEHGVYL CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEE DDEIIDLMLERGTYLVPTVAAPYFILNAGKESGITEATLRKCEIVAIPHKESFLKAYKKG CHHHHHHHHHCCCEEEEHHHCCEEEEECCCCCCCCHHHHCEEEEEEECCHHHHHHHHHCC IKIAVGSDAGTSYNEHGKTYYEMKLMSDYGMDNMDIIVAATKTASELLRIDKNYGTLEKG CEEEECCCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCC KKADVIVVNGNPVENIDVLADVLAVFKLGKKVR CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]