Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is 126447045
Identifier: 126447045
GI number: 126447045
Start: 1025423
End: 1026781
Strand: Direct
Name: 126447045
Synonym: BMA10247_A1084
Alternate gene names: NA
Gene position: 1025423-1026781 (Clockwise)
Preceding gene: 126446375
Following gene: 126446187
Centisome position: 43.59
GC content: 69.76
Gene sequence:
>1359_bases ATGCTCAAACGAACGCTTTCCTTCATGCTGGCCGGCTGCCTCGCGTTGCCCGGCCTGTCGAGCGCGGCGGACGCCGCTGC TTCCGGCGCGCCCGCCTCCGCGGCTTCGTCCGTGCCTGCTGCGTCCGCCGCCCCCGCGGCCGTGCGCGCCGCCGATGCGA CGCTCGTCGAGCGCGGCCGTTATCTGGCCGTCGCGGGCGACTGCATGGCGTGCCACACGGCGAAGGGCGGCAAGCCGTTC GCCGGCGGTCTGCCGATGCGCGCGCCGCTGCTCGGCACGATCTACACGACGAACATCACGCCCGACAAGGAAACGGGCAT CGGCGACTGGTCGTTCGCGGACTTCGAGCGCGCGGTGCGTCACGGCGTCGCGAAGAACGGCGACAACCTGTATCCGGCGA TGCCGTACGTGTCGTACACGAAGGTCACCGACGACGACGTGAAGGCGCTCTACGCGTACTTCATGCACGGCGTCGAACCG GTCAGGCAGCCGCCGCGCAGGAACGACATCCCGTGGTATCTGAGCATGCGCTGGCCGCTCAAGATCTGGAACCTGCTGTT CCTGAAGGAAGGCGTGTATCAGCCGAAGCCGGAGCGCGGCGTCGAATGGAACCGCGGCGCGTATCTCGTGCAGGGCCTCG CGCATTGCGGCACGTGCCATACGCCGCGCGCGGTGACGCTGCAGGAGAAGTCGCTCGACGAAACGGGCGGCAGCTTCCTC GCGGGCTCGGTGCTGTCCGGCTGGGACGGCTACAACATCACGTTGGACCCGAACGCGGGAATCGGCGGCTGGTCGCAGCC GCAGCTCGTCCAGTATCTGCGCACGGGCAGCGTGCCGGGCCTCGCGCAGGCGGCGGGGCCGATGGCCGAGGCCGTCGAGC ACAGCTTCTCGCGGATGAGCAATGCGGACATCGGCGCGATCGCGACGTACGTGTGCACGGTGCCCGCCGTCGCCGACGGC GCCGCGAAAGCGCGCTCCGCGTGGGGCAAGCCGGCCGAGGACGGCATCCGGCTGCGCGGCGTCGCGCTCGCGTCGACGGG CATCGATCCCGCGCGCCTGTATCTCGGCAACTGCGCGAGCTGCCATCAGATGCAGGGCAAGGGCACGCCGGACGGCTACT ATCCGCAGCTCTTCCACAACTCGACGGTCGGCGCGCCGAATCCGACGAATCTCGTGCAGGTGATCCTGAACGGCGTCGCG CGCAAGGCGGGCGGCGAGGACGTCGGGATGCCGGCGTTCCGGCACGAGCTGTCGGACGCGCAGATCGCCGCGCTCGCGAA CTACCTGACCGTGCAATTCGGCAATCCGGCGGCGAAGGTGAGCGAGCAGGACGTTGCGAAGCTGCGCGCCGCGCAGTAA
Upstream 100 bases:
>100_bases CGAGCAGCGCGACGATGCCGACGGTCGGCACGGTGAACGTGACGTTGACGATCGCGGCGCTCGCGCTGCGGATCTCGGAC CAGTTGAAGAAGGAAATCTG
Downstream 100 bases:
>100_bases CGTACGAGTCGTTATCCGGCGATCGGGGGGAGGACGGCATCGCACCGGGCGGCCGTCCGGTGGCAGGTCGCAGTCGACAA GGAGACGGCGCACCGCGCGC
Product: cytochrome c family protein
Products: NA
Alternate protein names: GA 2-DH cytochrome c subunit; GADH cytochrome c subunit [H]
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ
Sequences:
>Translated_452_residues MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ >Mature_452_residues MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate [H]
COG id: COG2010
COG function: function code C; Cytochrome c, mono- and diheme variants
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 cytochrome c domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR008168 - InterPro: IPR014353 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 47663; Mature: 47663
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGR CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCC YLAVAGDCMACHTAKGGKPFAGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVR EEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH HGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEPVRQPPRRNDIPWYLSMRWPL HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECHH KIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCCCEE AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMS EHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHC NADIGAIATYVCTVPAVADGAAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCAS CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCHH CHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVARKAGGEDVGMPAFRHELSDA HHHCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH QIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ HHHHHHHHHEEEECCCHHHCCHHHHHHHHCCC >Mature Secondary Structure MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGR CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCC YLAVAGDCMACHTAKGGKPFAGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVR EEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH HGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEPVRQPPRRNDIPWYLSMRWPL HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECHH KIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCCCEE AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMS EHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHC NADIGAIATYVCTVPAVADGAAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCAS CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCHH CHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVARKAGGEDVGMPAFRHELSDA HHHCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH QIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ HHHHHHHHHEEEECCCHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]