Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is 126447045

Identifier: 126447045

GI number: 126447045

Start: 1025423

End: 1026781

Strand: Direct

Name: 126447045

Synonym: BMA10247_A1084

Alternate gene names: NA

Gene position: 1025423-1026781 (Clockwise)

Preceding gene: 126446375

Following gene: 126446187

Centisome position: 43.59

GC content: 69.76

Gene sequence:

>1359_bases
ATGCTCAAACGAACGCTTTCCTTCATGCTGGCCGGCTGCCTCGCGTTGCCCGGCCTGTCGAGCGCGGCGGACGCCGCTGC
TTCCGGCGCGCCCGCCTCCGCGGCTTCGTCCGTGCCTGCTGCGTCCGCCGCCCCCGCGGCCGTGCGCGCCGCCGATGCGA
CGCTCGTCGAGCGCGGCCGTTATCTGGCCGTCGCGGGCGACTGCATGGCGTGCCACACGGCGAAGGGCGGCAAGCCGTTC
GCCGGCGGTCTGCCGATGCGCGCGCCGCTGCTCGGCACGATCTACACGACGAACATCACGCCCGACAAGGAAACGGGCAT
CGGCGACTGGTCGTTCGCGGACTTCGAGCGCGCGGTGCGTCACGGCGTCGCGAAGAACGGCGACAACCTGTATCCGGCGA
TGCCGTACGTGTCGTACACGAAGGTCACCGACGACGACGTGAAGGCGCTCTACGCGTACTTCATGCACGGCGTCGAACCG
GTCAGGCAGCCGCCGCGCAGGAACGACATCCCGTGGTATCTGAGCATGCGCTGGCCGCTCAAGATCTGGAACCTGCTGTT
CCTGAAGGAAGGCGTGTATCAGCCGAAGCCGGAGCGCGGCGTCGAATGGAACCGCGGCGCGTATCTCGTGCAGGGCCTCG
CGCATTGCGGCACGTGCCATACGCCGCGCGCGGTGACGCTGCAGGAGAAGTCGCTCGACGAAACGGGCGGCAGCTTCCTC
GCGGGCTCGGTGCTGTCCGGCTGGGACGGCTACAACATCACGTTGGACCCGAACGCGGGAATCGGCGGCTGGTCGCAGCC
GCAGCTCGTCCAGTATCTGCGCACGGGCAGCGTGCCGGGCCTCGCGCAGGCGGCGGGGCCGATGGCCGAGGCCGTCGAGC
ACAGCTTCTCGCGGATGAGCAATGCGGACATCGGCGCGATCGCGACGTACGTGTGCACGGTGCCCGCCGTCGCCGACGGC
GCCGCGAAAGCGCGCTCCGCGTGGGGCAAGCCGGCCGAGGACGGCATCCGGCTGCGCGGCGTCGCGCTCGCGTCGACGGG
CATCGATCCCGCGCGCCTGTATCTCGGCAACTGCGCGAGCTGCCATCAGATGCAGGGCAAGGGCACGCCGGACGGCTACT
ATCCGCAGCTCTTCCACAACTCGACGGTCGGCGCGCCGAATCCGACGAATCTCGTGCAGGTGATCCTGAACGGCGTCGCG
CGCAAGGCGGGCGGCGAGGACGTCGGGATGCCGGCGTTCCGGCACGAGCTGTCGGACGCGCAGATCGCCGCGCTCGCGAA
CTACCTGACCGTGCAATTCGGCAATCCGGCGGCGAAGGTGAGCGAGCAGGACGTTGCGAAGCTGCGCGCCGCGCAGTAA

Upstream 100 bases:

>100_bases
CGAGCAGCGCGACGATGCCGACGGTCGGCACGGTGAACGTGACGTTGACGATCGCGGCGCTCGCGCTGCGGATCTCGGAC
CAGTTGAAGAAGGAAATCTG

Downstream 100 bases:

>100_bases
CGTACGAGTCGTTATCCGGCGATCGGGGGGAGGACGGCATCGCACCGGGCGGCCGTCCGGTGGCAGGTCGCAGTCGACAA
GGAGACGGCGCACCGCGCGC

Product: cytochrome c family protein

Products: NA

Alternate protein names: GA 2-DH cytochrome c subunit; GADH cytochrome c subunit [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF
AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP
VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL
AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG
AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA
RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ

Sequences:

>Translated_452_residues
MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF
AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP
VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL
AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG
AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA
RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ
>Mature_452_residues
MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGRYLAVAGDCMACHTAKGGKPF
AGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVRHGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEP
VRQPPRRNDIPWYLSMRWPLKIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL
AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMSNADIGAIATYVCTVPAVADG
AAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCASCHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVA
RKAGGEDVGMPAFRHELSDAQIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ

Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168
- InterPro:   IPR014353 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.1.99.3 [H]

Molecular weight: Translated: 47663; Mature: 47663

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGR
CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCC
YLAVAGDCMACHTAKGGKPFAGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVR
EEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
HGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEPVRQPPRRNDIPWYLSMRWPL
HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECHH
KIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCCCEE
AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMS
EHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHC
NADIGAIATYVCTVPAVADGAAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCAS
CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCHH
CHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVARKAGGEDVGMPAFRHELSDA
HHHCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH
QIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ
HHHHHHHHHEEEECCCHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MLKRTLSFMLAGCLALPGLSSAADAAASGAPASAASSVPAASAAPAAVRAADATLVERGR
CCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCC
YLAVAGDCMACHTAKGGKPFAGGLPMRAPLLGTIYTTNITPDKETGIGDWSFADFERAVR
EEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
HGVAKNGDNLYPAMPYVSYTKVTDDDVKALYAYFMHGVEPVRQPPRRNDIPWYLSMRWPL
HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEECHH
KIWNLLFLKEGVYQPKPERGVEWNRGAYLVQGLAHCGTCHTPRAVTLQEKSLDETGGSFL
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCCCEE
AGSVLSGWDGYNITLDPNAGIGGWSQPQLVQYLRTGSVPGLAQAAGPMAEAVEHSFSRMS
EHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHC
NADIGAIATYVCTVPAVADGAAKARSAWGKPAEDGIRLRGVALASTGIDPARLYLGNCAS
CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCHH
CHQMQGKGTPDGYYPQLFHNSTVGAPNPTNLVQVILNGVARKAGGEDVGMPAFRHELSDA
HHHCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHH
QIAALANYLTVQFGNPAAKVSEQDVAKLRAAQ
HHHHHHHHHEEEECCCHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9352901 [H]