Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is yphA [H]
Identifier: 126446187
GI number: 126446187
Start: 1026973
End: 1027386
Strand: Direct
Name: yphA [H]
Synonym: BMA10247_A1085
Alternate gene names: 126446187
Gene position: 1026973-1027386 (Clockwise)
Preceding gene: 126447045
Following gene: 126446819
Centisome position: 43.65
GC content: 63.29
Gene sequence:
>414_bases ATGAAACAGACTTTCCTTGCGCCTCAAAAAGACCTTCTGCTGCTGCTGTCCCGCATCCTGCTCGTCATCCTGTTCGTGAT CTTCGGCTGGGAGAAGCTGCTGAATTTCTCGGGCACGGCCCAGTTCATGGCCGCCGAGGGCACGCCGCTGCCCTCGATCG CGGCGGTCGTCGCCGTCGCGATGGAGTTCTTCGTCGGCATCGCGCTCCTGCTCGGCTTCTGCACGCGGCCGATCGCGCTG CTGCTCGGCCTCTACACGCTCGGCACCGCGTTCATCGGCCATCACTACTGGTCGATGCCCGCCGCCGAGCAGATGAACAT GATGATCCATTTCTACAAGAACATCGCGATCACGGGCGGCTTGCTCGCCCTGTGCGCGGCTGGCCCCGGACGCTATTCGC TCGATCGCGGCTGA
Upstream 100 bases:
>100_bases ACCGCGCGCGATGTGCGGCGCGCGCCGTCTCGGTTCGCAACCGGCACGTGCGCGATGCGTCGTTGCACCGCGCGGTGCCC GCTTCCGGCTTCAAACGACA
Downstream 100 bases:
>100_bases GCGGCGCGCCGGACGTGTTTTGAACCTGAGAGAAGACAACAGGCGGAGAACAATGGGTTTTCAATCGAGGAAAATGATGG TCGCGCTCGTCGCGGCCGGG
Product: DoxX family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MKQTFLAPQKDLLLLLSRILLVILFVIFGWEKLLNFSGTAQFMAAEGTPLPSIAAVVAVAMEFFVGIALLLGFCTRPIAL LLGLYTLGTAFIGHHYWSMPAAEQMNMMIHFYKNIAITGGLLALCAAGPGRYSLDRG
Sequences:
>Translated_137_residues MKQTFLAPQKDLLLLLSRILLVILFVIFGWEKLLNFSGTAQFMAAEGTPLPSIAAVVAVAMEFFVGIALLLGFCTRPIAL LLGLYTLGTAFIGHHYWSMPAAEQMNMMIHFYKNIAITGGLLALCAAGPGRYSLDRG >Mature_137_residues MKQTFLAPQKDLLLLLSRILLVILFVIFGWEKLLNFSGTAQFMAAEGTPLPSIAAVVAVAMEFFVGIALLLGFCTRPIAL LLGLYTLGTAFIGHHYWSMPAAEQMNMMIHFYKNIAITGGLLALCAAGPGRYSLDRG
Specific function: Unknown
COG id: COG2259
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the doxX family [H]
Homologues:
Organism=Escherichia coli, GI145693171, Length=127, Percent_Identity=50.3937007874016, Blast_Score=133, Evalue=5e-33, Organism=Escherichia coli, GI87082210, Length=130, Percent_Identity=42.3076923076923, Blast_Score=88, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011637 [H]
Pfam domain/function: PF07681 DoxX [H]
EC number: NA
Molecular weight: Translated: 14908; Mature: 14908
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQTFLAPQKDLLLLLSRILLVILFVIFGWEKLLNFSGTAQFMAAEGTPLPSIAAVVAVA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHHHHH MEFFVGIALLLGFCTRPIALLLGLYTLGTAFIGHHYWSMPAAEQMNMMIHFYKNIAITGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LLALCAAGPGRYSLDRG HHHHHHCCCCCCCCCCC >Mature Secondary Structure MKQTFLAPQKDLLLLLSRILLVILFVIFGWEKLLNFSGTAQFMAAEGTPLPSIAAVVAVA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCHHHHHHHHHH MEFFVGIALLLGFCTRPIALLLGLYTLGTAFIGHHYWSMPAAEQMNMMIHFYKNIAITGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LLALCAAGPGRYSLDRG HHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]