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The map label for this gene is plpD [H]

Identifier: 126207944

GI number: 126207944

Start: 532111

End: 532962

Strand: Direct

Name: plpD [H]

Synonym: APL_0460

Alternate gene names: 126207944

Gene position: 532111-532962 (Clockwise)

Preceding gene: 126207943

Following gene: 126207945

Centisome position: 23.39

GC content: 38.85

Gene sequence:

>852_bases
ATGAAAAATACGACTGTTTTTCGCGGATTATTATTATCGGGTATCGCTTTAGCAGTAACGGCTTGCGGTAATTTAAGTAA
CGTAACCGATGAAGGTACCACAGAGAATCCGGTATTCCCTAAAATTTCAGAATCAGAGTTTAATCATGACGGTTCTCAAT
TCGGTTCATGGCCTAATTGGGAAAACGTACGTCAAATTGAACGCGGTATGAATAAAGATCAATTATATAATCTAATCGGT
CGTCCGCATTTTGAAGAAGGTTTATACGGTGTGCGTGAGTGGGATTATGCATTTAATTACCGTGAAAACGGTGTGCATAA
AATTTGTCAATTCAAAGTATTATTTGACAAAGATATGAATGCGCAAAGTTTTTTTTGGTATCCGAACGGTTGTAACGGTA
ATGCATCATTTAACTTAAGCGGCGACTTCTTATTCGACTTTGATAAAGATACATTAACCGCAAAAGGTAAAGAAGTTGTG
GATAATGTTGCGGCTCAATTAAAATCTTCTAAAGCGGAACAAGTTAAAGTTGCAGGTTATACAGACCGCTTAGGTTCTGA
AAAATATAACTTGGATTTATCACAACGTCGCGCAAATATGGTTAAAGCGCGTTTAGTTCAACAAGGCGTGACTGCAAATA
TTAATGCTGTCGGTTACGGTAAAGCTCAACAAGTGAAAGCTTGTGACGGTATTCCGCACGGTCAAGAATTAAAAGACTGT
TTACGTCCAAATCGTCGAGTTGAAGTAACTGCAAACGGTGGAGTATTAAAACAAAATGAGGGTGGTAATGTGGCAGGTCC
TAACGGTCCGGCTCCGTTATATCAAACACCGGCATATAACTCCGGCAAATAA

Upstream 100 bases:

>100_bases
TTATTGTATTGTAGAATTAATTATAATCTATATGCCGTATTCAGGTATTTAGCATTATATAAAATGAATGAAGTTTTTAA
TCTATAAAGGACATCTTACG

Downstream 100 bases:

>100_bases
TTTACAGTTTCTCTTTAACTGGAGTAAAATAGGGGCTACTTTATAAAGTAGCCTTTTTTACGTTTATGCAGGAGAAAATT
TATGACCTATCAAGCTATTG

Product: lipoprotein Plp4

Products: NA

Alternate protein names: OMP P5 [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKNTTVFRGLLLSGIALAVTACGNLSNVTDEGTTENPVFPKISESEFNHDGSQFGSWPNWENVRQIERGMNKDQLYNLIG
RPHFEEGLYGVREWDYAFNYRENGVHKICQFKVLFDKDMNAQSFFWYPNGCNGNASFNLSGDFLFDFDKDTLTAKGKEVV
DNVAAQLKSSKAEQVKVAGYTDRLGSEKYNLDLSQRRANMVKARLVQQGVTANINAVGYGKAQQVKACDGIPHGQELKDC
LRPNRRVEVTANGGVLKQNEGGNVAGPNGPAPLYQTPAYNSGK

Sequences:

>Translated_283_residues
MKNTTVFRGLLLSGIALAVTACGNLSNVTDEGTTENPVFPKISESEFNHDGSQFGSWPNWENVRQIERGMNKDQLYNLIG
RPHFEEGLYGVREWDYAFNYRENGVHKICQFKVLFDKDMNAQSFFWYPNGCNGNASFNLSGDFLFDFDKDTLTAKGKEVV
DNVAAQLKSSKAEQVKVAGYTDRLGSEKYNLDLSQRRANMVKARLVQQGVTANINAVGYGKAQQVKACDGIPHGQELKDC
LRPNRRVEVTANGGVLKQNEGGNVAGPNGPAPLYQTPAYNSGK
>Mature_283_residues
MKNTTVFRGLLLSGIALAVTACGNLSNVTDEGTTENPVFPKISESEFNHDGSQFGSWPNWENVRQIERGMNKDQLYNLIG
RPHFEEGLYGVREWDYAFNYRENGVHKICQFKVLFDKDMNAQSFFWYPNGCNGNASFNLSGDFLFDFDKDTLTAKGKEVV
DNVAAQLKSSKAEQVKVAGYTDRLGSEKYNLDLSQRRANMVKARLVQQGVTANINAVGYGKAQQVKACDGIPHGQELKDC
LRPNRRVEVTANGGVLKQNEGGNVAGPNGPAPLYQTPAYNSGK

Specific function: Required For The Action Of Colicins K And L And For The Stabilization Of Mating Aggregates In Conjugation. Serves As A Receptor For A Number Of T-Even Like Phages. Also Acts As A Porin With Low Permeability That Allows Slow Penetration Of Small Solutes.

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=41.8032786885246, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR002368
- InterPro:   IPR006690
- InterPro:   IPR000498
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA; PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 31302; Mature: 31302

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTTVFRGLLLSGIALAVTACGNLSNVTDEGTTENPVFPKISESEFNHDGSQFGSWPNW
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCH
ENVRQIERGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRENGVHKICQFKVLFDKDMN
HHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHCEEECCCCCCCEEHEEEEEEECCCCC
AQSFFWYPNGCNGNASFNLSGDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGY
CCEEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
TDRLGSEKYNLDLSQRRANMVKARLVQQGVTANINAVGYGKAQQVKACDGIPHGQELKDC
HHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHH
LRPNRRVEVTANGGVLKQNEGGNVAGPNGPAPLYQTPAYNSGK
HCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCC
>Mature Secondary Structure
MKNTTVFRGLLLSGIALAVTACGNLSNVTDEGTTENPVFPKISESEFNHDGSQFGSWPNW
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCH
ENVRQIERGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRENGVHKICQFKVLFDKDMN
HHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHCEEECCCCCCCEEHEEEEEEECCCCC
AQSFFWYPNGCNGNASFNLSGDFLFDFDKDTLTAKGKEVVDNVAAQLKSSKAEQVKVAGY
CCEEEECCCCCCCCCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
TDRLGSEKYNLDLSQRRANMVKARLVQQGVTANINAVGYGKAQQVKACDGIPHGQELKDC
HHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHH
LRPNRRVEVTANGGVLKQNEGGNVAGPNGPAPLYQTPAYNSGK
HCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]