Click here to switch to the map view.

The map label for this gene is nlpC [H]

Identifier: 126207843

GI number: 126207843

Start: 401163

End: 401759

Strand: Direct

Name: nlpC [H]

Synonym: APL_0359

Alternate gene names: 126207843

Gene position: 401163-401759 (Clockwise)

Preceding gene: 126207842

Following gene: 126207846

Centisome position: 17.64

GC content: 44.89

Gene sequence:

>597_bases
ATGAAAAAACACCCTACTTTAACAAGGCTAAAGCCATTATTTATTACATCACTGTTCGCAATATTCGGTAGTTATTCTTC
AATCGCTTCCGCTAGTTTAAGTAGTCATCCCGCCACGTCAAGCCAAATTAAAATCGTCGCTAAAGCAGCGAGCGCCGAGC
AAATCGAAGCTCAAATTTCTTATAAACAGGGTATGAAAGCCCGTGTATCTCATCGTGAAGAACTTTCCACCGACGGCGGT
AATGCCGCTAAAAAAGTCCACAGCATCTATCGTAAATGGGCGGGAACTCGCTATCGCTTAGGCGGTGAGGGTCGCGGCGG
TATTGATTGTTCGGCTTTCGTACAGAAAACCATGAGCGGTGCTTTTAATCTTGATTTACCTCGCTCTACCGCAGAGCAAC
GCCATTTAGGTCGTTCTATTTCCAAATCGGATTTACGTCCCGGCGATTTAGTTTTTTTCCGCCGCAATAATCACGTCGGT
GTTTATATCGGTGCAGGTAAATTTGTTCATGCCAGTACCAGCCAAGGAGTAACTACCAGTTCTCTTTCTGAACGTTATTG
GGCGAGAAATTATACGCAATCTCGTCGCGTTCTCTAA

Upstream 100 bases:

>100_bases
TGATTGTTGCGACCTAGGTAAAATAGGTCGCCAAATTTATTAACTTTAAGATTTTTAATAGGAATCAACCGCTGTAGTTG
TTCTGGCGAGACAAATTATT

Downstream 100 bases:

>100_bases
TTACGTTTATATGAAAAGTCGTCAAAGAGGTTATTTGACGACTTTTTTCTATGCCGCATATTTTCTTGCTGCCGTTTGTG
CGGATTTATGGCGCATTTGG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKKHPTLTRLKPLFITSLFAIFGSYSSIASASLSSHPATSSQIKIVAKAASAEQIEAQISYKQGMKARVSHREELSTDGG
NAAKKVHSIYRKWAGTRYRLGGEGRGGIDCSAFVQKTMSGAFNLDLPRSTAEQRHLGRSISKSDLRPGDLVFFRRNNHVG
VYIGAGKFVHASTSQGVTTSSLSERYWARNYTQSRRVL

Sequences:

>Translated_198_residues
MKKHPTLTRLKPLFITSLFAIFGSYSSIASASLSSHPATSSQIKIVAKAASAEQIEAQISYKQGMKARVSHREELSTDGG
NAAKKVHSIYRKWAGTRYRLGGEGRGGIDCSAFVQKTMSGAFNLDLPRSTAEQRHLGRSISKSDLRPGDLVFFRRNNHVG
VYIGAGKFVHASTSQGVTTSSLSERYWARNYTQSRRVL
>Mature_198_residues
MKKHPTLTRLKPLFITSLFAIFGSYSSIASASLSSHPATSSQIKIVAKAASAEQIEAQISYKQGMKARVSHREELSTDGG
NAAKKVHSIYRKWAGTRYRLGGEGRGGIDCSAFVQKTMSGAFNLDLPRSTAEQRHLGRSISKSDLRPGDLVFFRRNNHVG
VYIGAGKFVHASTSQGVTTSSLSERYWARNYTQSRRVL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1788501, Length=121, Percent_Identity=52.8925619834711, Blast_Score=139, Evalue=9e-35,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=49.1071428571429, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787944, Length=113, Percent_Identity=42.4778761061947, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786421, Length=114, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 21754; Mature: 21754

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHPTLTRLKPLFITSLFAIFGSYSSIASASLSSHPATSSQIKIVAKAASAEQIEAQIS
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHH
YKQGMKARVSHREELSTDGGNAAKKVHSIYRKWAGTRYRLGGEGRGGIDCSAFVQKTMSG
HHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCC
AFNLDLPRSTAEQRHLGRSISKSDLRPGDLVFFRRNNHVGVYIGAGKFVHASTSQGVTTS
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEECCEEEECCCCCCCCHH
SLSERYWARNYTQSRRVL
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKHPTLTRLKPLFITSLFAIFGSYSSIASASLSSHPATSSQIKIVAKAASAEQIEAQIS
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHH
YKQGMKARVSHREELSTDGGNAAKKVHSIYRKWAGTRYRLGGEGRGGIDCSAFVQKTMSG
HHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCC
AFNLDLPRSTAEQRHLGRSISKSDLRPGDLVFFRRNNHVGVYIGAGKFVHASTSQGVTTS
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEECCEEEECCCCCCCCHH
SLSERYWARNYTQSRRVL
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]