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The map label for this gene is lptC [H]

Identifier: 126207822

GI number: 126207822

Start: 373211

End: 373807

Strand: Reverse

Name: lptC [H]

Synonym: APL_0338

Alternate gene names: 126207822

Gene position: 373807-373211 (Counterclockwise)

Preceding gene: 126207823

Following gene: 126207821

Centisome position: 16.43

GC content: 37.86

Gene sequence:

>597_bases
ATGAATATCCGCCTAAATATCATTTTATTAATTATTGTAGCGGCTTTGGCTGGTTGGTATGTCAGCCAACAAAAACCGGA
AAATGACGGCTTGGATCAATTAATTAAAAAAGAAGGAAATCCGGATTATACGGGCAATCGTATTACGACTTCTGTTTATG
ATCTAAAAGGTAAGCCGCAATATTTTGCCGAAGCAAAAGAAATCAAACGTTATCAAAATACCGAACTGACCGAATTCATT
CAGCCCTTGGTGGAATTATTCGATGCGGAAACCGCGCTTAAGCAATGGAAAGTCAGTGCGGATTACGCAGAAATTACCAA
AGAAAAAATACTGAATCTCGACGGTAACGTAAAACTTCAAGCGCTGGATAAGAATGCGCGTTTACAAAAAATTGAAACCG
ATAAACTTCGTATCGATTTAAATACGCAAGATATTTCTACCGAGAGCGTAGTAAAATCCGTCGGATTAGGCATCAGTACG
ACCGGTACGGGTTTAAAAGGTAATTTAAAACGGCAGGTGGCAACGATTACTAAAGATGTAAAAACGTATCTTGAACCGAC
AATCATTAAACAATCTAACGACGAACAAAAAAATTAG

Upstream 100 bases:

>100_bases
AAAGTTTACGCACTCTTACGCGATTTCTCACTTCCCATTGCTATATCCCTTCCAAAAATTGTGTTAGTATTATCAACCCT
TTTTACTCATTTAGATTTTT

Downstream 100 bases:

>100_bases
AGCATTTTCTCTGAAGGATACATAATGAAATTTGCAATTAAATCTATGGTGTTTACGGCTTTATTAAGTACCAGCCTCTC
GTCCTATGCACTCAAAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MNIRLNIILLIIVAALAGWYVSQQKPENDGLDQLIKKEGNPDYTGNRITTSVYDLKGKPQYFAEAKEIKRYQNTELTEFI
QPLVELFDAETALKQWKVSADYAEITKEKILNLDGNVKLQALDKNARLQKIETDKLRIDLNTQDISTESVVKSVGLGIST
TGTGLKGNLKRQVATITKDVKTYLEPTIIKQSNDEQKN

Sequences:

>Translated_198_residues
MNIRLNIILLIIVAALAGWYVSQQKPENDGLDQLIKKEGNPDYTGNRITTSVYDLKGKPQYFAEAKEIKRYQNTELTEFI
QPLVELFDAETALKQWKVSADYAEITKEKILNLDGNVKLQALDKNARLQKIETDKLRIDLNTQDISTESVVKSVGLGIST
TGTGLKGNLKRQVATITKDVKTYLEPTIIKQSNDEQKN
>Mature_198_residues
MNIRLNIILLIIVAALAGWYVSQQKPENDGLDQLIKKEGNPDYTGNRITTSVYDLKGKPQYFAEAKEIKRYQNTELTEFI
QPLVELFDAETALKQWKVSADYAEITKEKILNLDGNVKLQALDKNARLQKIETDKLRIDLNTQDISTESVVKSVGLGIST
TGTGLKGNLKRQVATITKDVKTYLEPTIIKQSNDEQKN

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=182, Percent_Identity=29.1208791208791, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 22314; Mature: 22314

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRLNIILLIIVAALAGWYVSQQKPENDGLDQLIKKEGNPDYTGNRITTSVYDLKGKPQ
CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCH
YFAEAKEIKRYQNTELTEFIQPLVELFDAETALKQWKVSADYAEITKEKILNLDGNVKLQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
ALDKNARLQKIETDKLRIDLNTQDISTESVVKSVGLGISTTGTGLKGNLKRQVATITKDV
EECCCCCEEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
KTYLEPTIIKQSNDEQKN
HHHHCCCEEECCCCCCCC
>Mature Secondary Structure
MNIRLNIILLIIVAALAGWYVSQQKPENDGLDQLIKKEGNPDYTGNRITTSVYDLKGKPQ
CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCH
YFAEAKEIKRYQNTELTEFIQPLVELFDAETALKQWKVSADYAEITKEKILNLDGNVKLQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
ALDKNARLQKIETDKLRIDLNTQDISTESVVKSVGLGISTTGTGLKGNLKRQVATITKDV
EECCCCCEEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
KTYLEPTIIKQSNDEQKN
HHHHCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]