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The map label for this gene is ycbB [C]

Identifier: 126207609

GI number: 126207609

Start: 138299

End: 139864

Strand: Direct

Name: ycbB [C]

Synonym: APL_0121

Alternate gene names: 126207609

Gene position: 138299-139864 (Clockwise)

Preceding gene: 126207608

Following gene: 126207610

Centisome position: 6.08

GC content: 40.74

Gene sequence:

>1566_bases
ATGAGTAAGGCGAAAACCTTCAAATTACTGCCGTTAGTAATGCTTTCAAGTGTCGTTTTAGCCGAAACTAATGCAACTCA
TCTTCAGGCTGCATCAACAGAAAACGCAACGGTTAATCATGCGACATCGGATGCAATTTTACCCCAGCTAAGTTTTAGCG
CTCAGCAGGCTAGAGCGGCTGAACTTGCAAAACGTGCGGATTATGTTTTTGAGCAAGAGCAGATTCGTTTGGAAGAAGAA
CGTAAATTGCAAGAAGCGGTGTTGAAAGTAAAGCAAACGGTCGGAGATAATCAGTTATTACTAACTAAATCGGTTGCTAA
AATTTATTTGGATAACGATTATGCAAGTATGTGGAATGACAAGCATGCGGAGAAGCAATTCCTCAAGGAATACGCATTAT
TCGCCGCAAGCGGCGTATCAAGCAAATCGGCCAAAGCATTACAACAGATTTTAAATCATCCGGAAGGTTTGGGCAGAGAT
ATCTTATTAACCGACGGTTTCTTAGATTATCTCTATTACAATAAAAACGTGTATAAAAATGCGAATCAATGGTTATACAA
CCTTGGCAGCTATAGCCCTAAATCACCTAGCTCGGAACAAATAAATCAATGGGTGGAATCGACTAAGAACGATGATTCGG
CTCAGTTCGTGGCAAATTTAGTGCCTCGTAATCATATTTATCAAGAAACGGTGCAACGCGTCTTAGCGATGTCTGCCGGC
GATAATACGAAGAAAGTAGCAAAAGCAAAGAAAACAAAAACGCCTGAGCCGGCAACGGCAACCGGTAACGATACGTTCTA
TAAATTAGCGTTAAATGCGCAAAGATTACGTATTATTCCGAGTTTTAATAACGGTATCTTTGTTAATATCCCCAGTTATC
AACTATTTTACTTCCGTGACGGTCAGCTTGCATTACAATCAAAAGTGATTGTCGGTCGCGATGATCGCCGTACGCCGGTT
ATGTATAGTAAGCTTAGTAACGTAGTGGTTAATCCGCCTTGGAATATTCCGCCGACAATTTTAAATAAAGATATTGTGCC
GAAATTGGCTAAAAATCCGGGATTCGCAGATGCCGCAGGTTATGAAATTTTTGACGGAAAAGGCAATAAAATTAATCCTC
GCAGCGTGAATTGGGCACAATATGTGAACAGCAAAAATCTTCCTTACCGTATTCGCCAAAAAGCCGGTGATGACAGTGCA
TTAGGTCGTTTTAAATTTAATATGCCGAGTTCGGATGCGATTTATTTACACGATACGCCGAATCGCGGCTTATTCGGTAA
AACGGATCGCGCGTTAAGTTCCGGTTGCGTACGTGTGGAACGTTCGGATGATCTGGCAAGTATTTTGCTGAAAGAAGCCG
GTTGGAGTATGGATAAAAAACAAAAAGTATTGGCAAGTCAGAAAACCACTTCGGCTAATATTCGTTCGGACAATCCGGTT
TATTTATACTATGTTACCGCATGGGTAGAGAACGGTAAGGTATATACGTTACCTGATATCTATAAATTTGATACCTCTAT
TCCGAAAAATGCGGTGAATTGGAGTAAAGTTAAAAGTGTGATCTAA

Upstream 100 bases:

>100_bases
ATAAAATAGCTTATAATGTATTAAATTAGCTGCCGCTTAATGAAAGTTAGGCGGTTTGCTTTTATTGATATTTTATAATC
TCGGAGCTAAGGATTTTTAT

Downstream 100 bases:

>100_bases
TTCACAAATATAAAAATTTCCGAGAAGTTTTACTTGCTTCTCGGAACTTTCTTTTTTAGATTAAACCTAATGGGCTTATT
ACTTAATAAGCCTTTATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MSKAKTFKLLPLVMLSSVVLAETNATHLQAASTENATVNHATSDAILPQLSFSAQQARAAELAKRADYVFEQEQIRLEEE
RKLQEAVLKVKQTVGDNQLLLTKSVAKIYLDNDYASMWNDKHAEKQFLKEYALFAASGVSSKSAKALQQILNHPEGLGRD
ILLTDGFLDYLYYNKNVYKNANQWLYNLGSYSPKSPSSEQINQWVESTKNDDSAQFVANLVPRNHIYQETVQRVLAMSAG
DNTKKVAKAKKTKTPEPATATGNDTFYKLALNAQRLRIIPSFNNGIFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPV
MYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNSKNLPYRIRQKAGDDSA
LGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDDLASILLKEAGWSMDKKQKVLASQKTTSANIRSDNPV
YLYYVTAWVENGKVYTLPDIYKFDTSIPKNAVNWSKVKSVI

Sequences:

>Translated_521_residues
MSKAKTFKLLPLVMLSSVVLAETNATHLQAASTENATVNHATSDAILPQLSFSAQQARAAELAKRADYVFEQEQIRLEEE
RKLQEAVLKVKQTVGDNQLLLTKSVAKIYLDNDYASMWNDKHAEKQFLKEYALFAASGVSSKSAKALQQILNHPEGLGRD
ILLTDGFLDYLYYNKNVYKNANQWLYNLGSYSPKSPSSEQINQWVESTKNDDSAQFVANLVPRNHIYQETVQRVLAMSAG
DNTKKVAKAKKTKTPEPATATGNDTFYKLALNAQRLRIIPSFNNGIFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPV
MYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNSKNLPYRIRQKAGDDSA
LGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDDLASILLKEAGWSMDKKQKVLASQKTTSANIRSDNPV
YLYYVTAWVENGKVYTLPDIYKFDTSIPKNAVNWSKVKSVI
>Mature_520_residues
SKAKTFKLLPLVMLSSVVLAETNATHLQAASTENATVNHATSDAILPQLSFSAQQARAAELAKRADYVFEQEQIRLEEER
KLQEAVLKVKQTVGDNQLLLTKSVAKIYLDNDYASMWNDKHAEKQFLKEYALFAASGVSSKSAKALQQILNHPEGLGRDI
LLTDGFLDYLYYNKNVYKNANQWLYNLGSYSPKSPSSEQINQWVESTKNDDSAQFVANLVPRNHIYQETVQRVLAMSAGD
NTKKVAKAKKTKTPEPATATGNDTFYKLALNAQRLRIIPSFNNGIFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVM
YSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNSKNLPYRIRQKAGDDSAL
GRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDDLASILLKEAGWSMDKKQKVLASQKTTSANIRSDNPVY
LYYVTAWVENGKVYTLPDIYKFDTSIPKNAVNWSKVKSVI

Specific function: Unknown

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=240, Percent_Identity=50.8333333333333, Blast_Score=252, Evalue=5e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58421; Mature: 58290

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKTFKLLPLVMLSSVVLAETNATHLQAASTENATVNHATSDAILPQLSFSAQQARAA
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHCCCCCCHHHHHHHH
ELAKRADYVFEQEQIRLEEERKLQEAVLKVKQTVGDNQLLLTKSVAKIYLDNDYASMWND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHCCC
KHAEKQFLKEYALFAASGVSSKSAKALQQILNHPEGLGRDILLTDGFLDYLYYNKNVYKN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCHHHCC
ANQWLYNLGSYSPKSPSSEQINQWVESTKNDDSAQFVANLVPRNHIYQETVQRVLAMSAG
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
DNTKKVAKAKKTKTPEPATATGNDTFYKLALNAQRLRIIPSFNNGIFVNIPSYQLFYFRD
CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCEEEEEEEC
GQLALQSKVIVGRDDRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAG
CCEEEEEEEEECCCCCCCCHHHHHHCCEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCC
YEIFDGKGNKINPRSVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTP
CEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCCCEEEEEECC
NRGLFGKTDRALSSGCVRVERSDDLASILLKEAGWSMDKKQKVLASQKTTSANIRSDNPV
CCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCE
YLYYVTAWVENGKVYTLPDIYKFDTSIPKNAVNWSKVKSVI
EEEEEEEEEECCEEEECCCHHCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
SKAKTFKLLPLVMLSSVVLAETNATHLQAASTENATVNHATSDAILPQLSFSAQQARAA
CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHHCCCCCCHHHHHHHH
ELAKRADYVFEQEQIRLEEERKLQEAVLKVKQTVGDNQLLLTKSVAKIYLDNDYASMWND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHCCC
KHAEKQFLKEYALFAASGVSSKSAKALQQILNHPEGLGRDILLTDGFLDYLYYNKNVYKN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHCCCHHHCC
ANQWLYNLGSYSPKSPSSEQINQWVESTKNDDSAQFVANLVPRNHIYQETVQRVLAMSAG
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
DNTKKVAKAKKTKTPEPATATGNDTFYKLALNAQRLRIIPSFNNGIFVNIPSYQLFYFRD
CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCEEEEECCEEEEEEEC
GQLALQSKVIVGRDDRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAG
CCEEEEEEEEECCCCCCCCHHHHHHCCEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCC
YEIFDGKGNKINPRSVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTP
CEEECCCCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCEEEECCCCCCEEEEEECC
NRGLFGKTDRALSSGCVRVERSDDLASILLKEAGWSMDKKQKVLASQKTTSANIRSDNPV
CCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCE
YLYYVTAWVENGKVYTLPDIYKFDTSIPKNAVNWSKVKSVI
EEEEEEEEEECCEEEECCCHHCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]