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The map label for this gene is ycbK [H]

Identifier: 126207610

GI number: 126207610

Start: 140036

End: 140590

Strand: Direct

Name: ycbK [H]

Synonym: APL_0122

Alternate gene names: 126207610

Gene position: 140036-140590 (Clockwise)

Preceding gene: 126207609

Following gene: 126207611

Centisome position: 6.16

GC content: 43.96

Gene sequence:

>555_bases
ATGAATCAAATCAATGTTCAACGCCGTAAGTGGTTATCGCTCGGCGGTCTTGTTTTAGGAGCAAGTTTATTGCCAAGCAA
AGTAATGGCGCTTCTTTCCACTCCTACTCCGTTAGCGTTACGTTTTCGTAATATCAATACGGGCGATACGTATGCGGCAA
CATTCAGTAACGGTTCTCTTTCAAGCGGCGATTTAGGGAAATTAAATTACCTTATGCGTGATCGTTATACCAATCAAGTT
AAACGAATCGACCCGATGTTATTCGTGAAATTAAATCAAATTCAGCAGCGTTTAGGTTTCCGTAATGCGGAAGTATTAGT
GCTAAGCGGTTATCGTTCCGCACAAACCAATGCAAGAATGCATAGAACGCGACGCGGCGTAGCAAGTAACAGTTATCATA
TTCGCGGACAAGCGGTTGATTTTAGAATCTCCGGTGTTCCTTTGGCAAAATTAAAAGCGGCTGCGGAAAGTTTGCATAAT
GGCGGTGTCGGTTATTATCCTCGCAGTAATTTCGTTCATGTAGATACCGGCCCTGTTCGTACGTGGCGCGGTTAG

Upstream 100 bases:

>100_bases
GGGCTTATTACTTAATAAGCCTTTATTTATGGTCGATAGTAAATAATTTGTGATAAATCATTTACTATCAATCATTACTC
GTGAAGAATGAGGAATAGCA

Downstream 100 bases:

>100_bases
GTAAGCGGTCTAATTTTATGTTTAATTTACAAATTATCCCGGTCAGTGCGTTTCAGCAAAATTGTAGCGTTATTTGGGAT
GATAATAAGAATGCCGCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNQINVQRRKWLSLGGLVLGASLLPSKVMALLSTPTPLALRFRNINTGDTYAATFSNGSLSSGDLGKLNYLMRDRYTNQV
KRIDPMLFVKLNQIQQRLGFRNAEVLVLSGYRSAQTNARMHRTRRGVASNSYHIRGQAVDFRISGVPLAKLKAAAESLHN
GGVGYYPRSNFVHVDTGPVRTWRG

Sequences:

>Translated_184_residues
MNQINVQRRKWLSLGGLVLGASLLPSKVMALLSTPTPLALRFRNINTGDTYAATFSNGSLSSGDLGKLNYLMRDRYTNQV
KRIDPMLFVKLNQIQQRLGFRNAEVLVLSGYRSAQTNARMHRTRRGVASNSYHIRGQAVDFRISGVPLAKLKAAAESLHN
GGVGYYPRSNFVHVDTGPVRTWRG
>Mature_184_residues
MNQINVQRRKWLSLGGLVLGASLLPSKVMALLSTPTPLALRFRNINTGDTYAATFSNGSLSSGDLGKLNYLMRDRYTNQV
KRIDPMLFVKLNQIQQRLGFRNAEVLVLSGYRSAQTNARMHRTRRGVASNSYHIRGQAVDFRISGVPLAKLKAAAESLHN
GGVGYYPRSNFVHVDTGPVRTWRG

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=183, Percent_Identity=48.6338797814208, Blast_Score=177, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20461; Mature: 20461

Theoretical pI: Translated: 11.88; Mature: 11.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQINVQRRKWLSLGGLVLGASLLPSKVMALLSTPTPLALRFRNINTGDTYAATFSNGSL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCC
SSGDLGKLNYLMRDRYTNQVKRIDPMLFVKLNQIQQRLGFRNAEVLVLSGYRSAQTNARM
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
HRTRRGVASNSYHIRGQAVDFRISGVPLAKLKAAAESLHNGGVGYYPRSNFVHVDTGPVR
HHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
TWRG
CCCC
>Mature Secondary Structure
MNQINVQRRKWLSLGGLVLGASLLPSKVMALLSTPTPLALRFRNINTGDTYAATFSNGSL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCC
SSGDLGKLNYLMRDRYTNQVKRIDPMLFVKLNQIQQRLGFRNAEVLVLSGYRSAQTNARM
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
HRTRRGVASNSYHIRGQAVDFRISGVPLAKLKAAAESLHNGGVGYYPRSNFVHVDTGPVR
HHHHCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
TWRG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]