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The map label for this gene is ssaU [H]

Identifier: 126174201

GI number: 126174201

Start: 2290379

End: 2291428

Strand: Direct

Name: ssaU [H]

Synonym: Sbal_1977

Alternate gene names: 126174201

Gene position: 2290379-2291428 (Clockwise)

Preceding gene: 126174200

Following gene: 126174203

Centisome position: 44.67

GC content: 45.71

Gene sequence:

>1050_bases
ATGGCCGAGAAAACAGAAAAACCCACAGAAAAACGCTTACGAGAAGCGAGAAATCGCGGCCAGGTCATTAAAAGTGCAGA
AATCGTCACCGGACTACAGATGGCGATCATTCTCGGGTACTTTCTCTACGAAGGGCCCGCACTCGTTCAAGCCATGATGG
CGTTAATCGACTTAACCATTAATGCCATCAATCTTCCCCTCGAAACAGCGGCCGAACAAATCGTGGGTACCTTCGCCATG
CTGGCATTACGTTTTCTCGGTGGGCTGACATTAGTACTCGTGTTTACCATAGTGGTGGGGAACTCAGTCCAAACAGGCCC
CGTTTGGGCGACTGAGTCTATAATGCCGAGCATGAATAAACTCAATGTTATGAATAATGCTAAGCAACTTATTTCACTGA
AAAGTCTATTCGAGCTCGCTAAAAACCTCGTCAAAGTCACAGTGTTGAGTTTAGTGTTTTACTATCTGCTCCATCGTTAC
GTTAATGCCTTTCAATACTTGCCTCTATGCGAAGAAGCCTGCGGCATCAGTGTGATTTCGACCATGATCACATGGCTCTG
GGGAAGCTTTTTAGGATGCTACTTAATATTTGGGATCGCCGATTATGCATTTCAACGCTATAGCCTAATGAAAGAGCTCA
AAATGTCCAAAGATGACACCAAACAAGAGTACAAAGATTCTGAAGGTAACCCCGAAATGAAACAGAAACGCCGCGAAACA
CAGCGTGAAGTCGCGTCTGGCAGCCTTGCCAATAACGTTCGCAAAGCCACTGTGGTTGTACGAAATCCAACCCATATTGC
CGTGTGTTTGTATTATTGCGAAGGCGAGACACCGTTGCCTAAAGTGCTCGAAAAAGCCGAAGATCACATGGCCTTACACA
TAGTGGCTTTAGCCGAGAAAGCAGGGGTGCCAATAGTTGAGAACATTCCATTGGCACGCGCCTTATTTAAACATGTTGAG
ACTGGAGACGTGATTCCAGAGAGCCTATTTGAACCCGTAGCAGAGCTATTGCGTTTAGTGATGGCTATATCCTATGACAA
TATGAAGTAA

Upstream 100 bases:

>100_bases
CTTGTCCCATTACCTGCAGACCATTTCTGGGGTAGAGCAGCACGTAGATATTTTGTTTGGACTCTTAGCAGGGCACTAGT
GCCCCTGACGGATGTGACCT

Downstream 100 bases:

>100_bases
CAGGTTTTACTGTAAGCAAATAGGATAGTTGATGATAATCGTCTCTTAGGAATCCCCTAATGAATGCTATGAAATTCAAA
TAAGTGGCCACGGCTTATAT

Product: secretion system apparatus protein SsaU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTINAINLPLETAAEQIVGTFAM
LALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRY
VNAFQYLPLCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEKAGVPIVENIPLARALFKHVE
TGDVIPESLFEPVAELLRLVMAISYDNMK

Sequences:

>Translated_349_residues
MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTINAINLPLETAAEQIVGTFAM
LALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRY
VNAFQYLPLCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEKAGVPIVENIPLARALFKHVE
TGDVIPESLFEPVAELLRLVMAISYDNMK
>Mature_348_residues
AEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTINAINLPLETAAEQIVGTFAML
ALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYV
NAFQYLPLCEEACGISVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRETQ
REVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEKAGVPIVENIPLARALFKHVET
GDVIPESLFEPVAELLRLVMAISYDNMK

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=349, Percent_Identity=31.8051575931232, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 39015; Mature: 38884

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NAINLPLETAAEQIVGTFAMLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHH
LNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGISVIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEK
HHHHHCCHHHHCHHHHEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISYDNMK
CCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NAINLPLETAAEQIVGTFAMLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPSMNK
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHH
LNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGISVIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKRRET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
QREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVALAEK
HHHHHCCHHHHCHHHHEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISYDNMK
CCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]