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The map label for this gene is yscS [H]

Identifier: 126174199

GI number: 126174199

Start: 2289285

End: 2289554

Strand: Direct

Name: yscS [H]

Synonym: Sbal_1975

Alternate gene names: 126174199

Gene position: 2289285-2289554 (Clockwise)

Preceding gene: 126174198

Following gene: 126174200

Centisome position: 44.65

GC content: 46.3

Gene sequence:

>270_bases
ATGAGCGAAACTATCATTGTACATTTCACCTCAGAACTACTGTGGATGGTGTTACTGCTGTCGCTACCTGTCGTTATCGT
GGCTTCAGTTGTCGGAGTTTTGGTTAGTCTTATTCAAGCCCTGACCCAAATCCAAGACCAAACACTGCAGTTTCTAATCA
AACTCATCGCCGTGTGCGTGACACTCGTGGTCTGTTATCACTGGATGGGCAGCTCACTGTTGAATTACGCCAGCATGGCT
TTCGATCAAATTAGCCAAATGGGGGATTAG

Upstream 100 bases:

>100_bases
TGGTCTCGCCCATGACTATAGCGCTACCTTTCAAGTTGTTGATTTTTATCTTGATGGGTGGATGGGAAAAACTGATCAGC
CAACTAATGATGTCATTCTC

Downstream 100 bases:

>100_bases
TGATGACAACTCTGCTGCCCAATCTGTTAACGGCACAACTTCCTGTATTGGCACTCTGTATGATGCGACCATTAGGCATG
ATGCTGTTATTGCCCCTATT

Product: HrpO family type III secretion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCVTLVVCYHWMGSSLLNYASMA
FDQISQMGD

Sequences:

>Translated_89_residues
MSETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCVTLVVCYHWMGSSLLNYASMA
FDQISQMGD
>Mature_88_residues
SETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCVTLVVCYHWMGSSLLNYASMAF
DQISQMGD

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 9842; Mature: 9711

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLVVCYHWMGSSLLNYASMAFDQISQMGD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SETIIVHFTSELLWMVLLLSLPVVIVASVVGVLVSLIQALTQIQDQTLQFLIKLIAVCV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLVVCYHWMGSSLLNYASMAFDQISQMGD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]