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The map label for this gene is rdgC

Identifier: 126173614

GI number: 126173614

Start: 1580736

End: 1581650

Strand: Reverse

Name: rdgC

Synonym: Sbal_1376

Alternate gene names: 126173614

Gene position: 1581650-1580736 (Counterclockwise)

Preceding gene: 126173619

Following gene: 126173612

Centisome position: 30.85

GC content: 45.14

Gene sequence:

>915_bases
ATGTGGTTTAAAAATCTTACTCTTTATCGTTTCAATAAACCTTTTGCCGTCGAAACCGAAGCGCTAGAAACTGCGTTGGC
CGATTTCACTTTCTCTCCGTGCTCAAGCCAAGATGTCAGTAAATTTGGTTTCTCTAATGCTTTAGGCAAGAAAGGCAGCT
CCTTGGTACACAGTGCCGACAATCGCCATCTGATCTGTGTAACTAAAGAAGAGAAAATCCTCCCAGGCCAAGTCATCAAA
GAAGCCTTAGAAGAAAAAGTCGCCCTCATTGAAGATGAAGAAAATCGTAAGATGGCGAAAAAAGAAAAAGATGCGCTAAA
AGATGAAATCATTACTAGCCTACTGCCACGCGCTTTTTCACGCCGCAGCCAAACCCATGCCTTGATTTTGCCAGAGCTGG
AAATGATCCTTGTCGACAGTTCAAGTGCCACTAAAGCCGAAGAGCTGTTAGCGTTATTACGTAAAGCGCTCGGTAGTTTG
CCGGTGATCCCATTGAGCTTTAAAGCGCCAGTCGAATCCAATTTAACCGAATGGTTAAAACTTGGCAGCGCGCCATTACC
TTTTGAAATGCAAGATGAAGCTGAACTTAAATCCGAAGCGGATGAAGGCGGCATTGTACGTTTCAAGCAACAGGATTTAA
AAGAAGACGAAGTATTAGCTCACCTCGCAACAGGCAAGCAAGTCCACAAGTTAGCACTGCATTTCGGCCAATCGATTGCA
CTATTATTGCAATCGGATGCCAGCGTTAAACGCCTTAAATTCTCTGAAGAATTTAGAGCGGGTAACGATGAAGTGGGCAC
AGACGACCCTATGGCACGTTTAGATGCAGACTTTGCCTTAATGGGCAGCGAGTTAGTCGCCTTGATGCATGCGCTCGTGG
CAGCACTAGGTGGACTCGAAGAAGCACAAGTTTAA

Upstream 100 bases:

>100_bases
TGAATTCTGATCCGCCGCTAGAAATTAGCTGTCGAACACAGGTTTACCCCGCCCAAACTATGCCGTAAACTGCCACTTTA
ATTTTCAATGAGCGCCTCTT

Downstream 100 bases:

>100_bases
GCCTAAGCCGTTAGGTAAACTAAATCTGCGACTCACTCGTATTATTATCGTATGAATGAGTTGAAATACAGAATAACAAA
AGGCGCACCGTCTAAATGAG

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MWFKNLTLYRFNKPFAVETEALETALADFTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKEEKILPGQVIK
EALEEKVALIEDEENRKMAKKEKDALKDEIITSLLPRAFSRRSQTHALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVESNLTEWLKLGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVAALGGLEEAQV

Sequences:

>Translated_304_residues
MWFKNLTLYRFNKPFAVETEALETALADFTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKEEKILPGQVIK
EALEEKVALIEDEENRKMAKKEKDALKDEIITSLLPRAFSRRSQTHALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVESNLTEWLKLGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVAALGGLEEAQV
>Mature_304_residues
MWFKNLTLYRFNKPFAVETEALETALADFTFSPCSSQDVSKFGFSNALGKKGSSLVHSADNRHLICVTKEEKILPGQVIK
EALEEKVALIEDEENRKMAKKEKDALKDEIITSLLPRAFSRRSQTHALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVESNLTEWLKLGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVAALGGLEEAQV

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=303, Percent_Identity=50.1650165016502, Blast_Score=299, Evalue=2e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_SHEB2 (B8EAS7)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002358892.1
- ProteinModelPortal:   B8EAS7
- SMR:   B8EAS7
- GeneID:   7089051
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_2983
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 33502; Mature: 33502

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNLTLYRFNKPFAVETEALETALADFTFSPCSSQDVSKFGFSNALGKKGSSLVHSAD
CCCCCEEEEEECCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCC
NRHLICVTKEEKILPGQVIKEALEEKVALIEDEENRKMAKKEKDALKDEIITSLLPRAFS
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQTHALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVESNLTEWLK
HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA
CCCCCCCCCCCCHHHHHHCCCCCCEEEECHHCCCHHHHHHHHHCCHHHHHHHHHHCCHHE
LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVAALGGLE
EEHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCH
EAQV
HCCC
>Mature Secondary Structure
MWFKNLTLYRFNKPFAVETEALETALADFTFSPCSSQDVSKFGFSNALGKKGSSLVHSAD
CCCCCEEEEEECCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCC
NRHLICVTKEEKILPGQVIKEALEEKVALIEDEENRKMAKKEKDALKDEIITSLLPRAFS
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQTHALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVESNLTEWLK
HCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LGSAPLPFEMQDEAELKSEADEGGIVRFKQQDLKEDEVLAHLATGKQVHKLALHFGQSIA
CCCCCCCCCCCCHHHHHHCCCCCCEEEECHHCCCHHHHHHHHHCCHHHHHHHHHHCCHHE
LLLQSDASVKRLKFSEEFRAGNDEVGTDDPMARLDADFALMGSELVALMHALVAALGGLE
EEHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCH
EAQV
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA