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The map label for this gene is xerC [H]

Identifier: 124485609

GI number: 124485609

Start: 769505

End: 770467

Strand: Reverse

Name: xerC [H]

Synonym: Mlab_0787

Alternate gene names: 124485609

Gene position: 770467-769505 (Counterclockwise)

Preceding gene: 124485616

Following gene: 124485608

Centisome position: 42.69

GC content: 47.98

Gene sequence:

>963_bases
ATGCGCAATCATTATCTACACCAAGAACCAAGAAGTAATCAGACGGAAATGGCACCCCCAAAACGAACCTTCAGCATCTG
GATTCCGAGATACCTCAGCAATCTGCAGACGAAGAATTATGCAGAAAATACCATCGAGGCATACGGGAGGATCCTGAAAC
TTTTTGCAACATACGAAACCTACCTGAAAGAAAACGACGGAAGCGTGCCGACATCCAGCGAAGAGCTGAATAATTTCGGC
ATGGGAGCTGAAATCGACACGAACTCCTATGAAATCGGGGATTTTTTTACCCTTCTACGAAATGAACGGCAGTTAAGCCC
GGCGAGTCTGCGCCAATACGACTCTGCTCTCAGCTCATTTTACGGATATCTGATCAATCAGGACATCACAGAAGCAAATC
CCATGACCAAAGTAGACCGACCGAAAATCAAGGACCGGGAACTCAAATACCTAAAGCACAATGAAGTGGTGGCGTTCATC
AACTCGATAGAAAATCCGAGAAATGCCCTTCTCATCCGAACGATCTACGCCACCGGAATGCGTATCTCCGAGATATGCGG
GCTTCTTGCAGAACACATCGACTTCGAAGAAGAAACGATTCGCGTTAGGGGAAAAGGTGGAAAGATCCGCATCGTATTTT
GCGATTCAGACACGCTGAACAAAATCCGCGAGCATCTGAACGGCAAAAAAAGCGGCCCGGTTTTCGAAGGACGAAACGGG
AACGCCATCTCCCCCAGAACCGTTCAGCATATTTTCAACATCTACGCACCTCCGGGAATTACTCCCCATAAAATCCGGCA
TAGTTATGCCAGCGAACTCTACAAACGTTCGCACAATCTCCGTGTAGTCCAGGAAAATCTCGGACACAACTCCATCCAGA
CAACAGAAATCTACATCCATACCGACATCGACGAGCGTAGAAAGGCGTACCGCAGCTACTTCCCGCTGGCAAACGGCGAA
TAA

Upstream 100 bases:

>100_bases
ATCTAAAAACCGTTTAAATCCATTTGTTTTTAAAATAAAACTCATTTTGAGCTTATTTTTGATTCGAAAAACAATCAAAA
TATTGCGCATAATGTCTATT

Downstream 100 bases:

>100_bases
TCCTCTCTTTTTTTTGAATACGTATTGTGAATTACCCAACTGGACACCACATTTCCACGCGAATGCACCTTATCAACACA
TGAAATAAACCATATGATGC

Product: formylmethanofuran dehydrogenase subunit E-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRNHYLHQEPRSNQTEMAPPKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFG
MGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAFI
NSIENPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNG
NAISPRTVQHIFNIYAPPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAYRSYFPLANGE

Sequences:

>Translated_320_residues
MRNHYLHQEPRSNQTEMAPPKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFG
MGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAFI
NSIENPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNG
NAISPRTVQHIFNIYAPPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAYRSYFPLANGE
>Mature_320_residues
MRNHYLHQEPRSNQTEMAPPKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFG
MGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAFI
NSIENPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNG
NAISPRTVQHIFNIYAPPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAYRSYFPLANGE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=264, Percent_Identity=31.0606060606061, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789261, Length=311, Percent_Identity=28.2958199356913, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36967; Mature: 36967

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNHYLHQEPRSNQTEMAPPKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYET
CCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLKENDGSVPTSSEELNNFGMGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSF
HHHCCCCCCCCCHHHHHHCCCCCEECCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAFINSIENPRNALLIRTIYATGM
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCC
RISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNG
CHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCC
NAISPRTVQHIFNIYAPPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIH
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEEEEEE
TDIDERRKAYRSYFPLANGE
CCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRNHYLHQEPRSNQTEMAPPKRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYET
CCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLKENDGSVPTSSEELNNFGMGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSF
HHHCCCCCCCCCHHHHHHCCCCCEECCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YGYLINQDITEANPMTKVDRPKIKDRELKYLKHNEVVAFINSIENPRNALLIRTIYATGM
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCC
RISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSGPVFEGRNG
CHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHCCCCCCCEEECCCC
NAISPRTVQHIFNIYAPPGITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIH
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEEEEEE
TDIDERRKAYRSYFPLANGE
CCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]