Click here to switch to the map view.

The map label for this gene is slmA [H]

Identifier: 124265694

GI number: 124265694

Start: 541439

End: 542101

Strand: Direct

Name: slmA [H]

Synonym: Mpe_A0501

Alternate gene names: 124265694

Gene position: 541439-542101 (Clockwise)

Preceding gene: 124265693

Following gene: 124265695

Centisome position: 13.39

GC content: 68.02

Gene sequence:

>663_bases
ATGTCCGACACGCCGATCCCTGAGCCGCTGGATGCCGCCGACGACACGCCCGCCGAGGGGGTCGCCGCCGCAGCACCCGT
GCGCAAGCGGCCCAAGCCGGGCGAGCGCCGCATCCAGATCCTCCAGACGCTGGCGTCCATGCTGGAACAGCCCGGTGCGG
AGCGCATCACGACGGCGGCCCTGGCGGCCAAGCTCGACGTCAGCGAAGCGGCGCTGTACCGGCACTTCGCCAGCAAGGCG
CAGATGTTCGAGGGGCTGATCGATTTCATCGAGAGCAGCGTGTTCACGCTGGTCAACCAGATCGTCGAGCGCGACACCGA
TCCGCGCGATCAGGTGCACAAGATGACCACCGTGCTGCTGCAGTTCGGCGAGAAGAACCCCGGCATGTCACGCGTGATGG
CGGGCGATGCCCTGGTGTTCGAGAACGAGCGCCTGACGGCGCGCATGAACCAGTTCTTCGATCGCTTCGAGTCGCAGCTG
CGACAGAGCCTGCGAGCGTTGGCCGAGGCCGGCGGGTCGCAGACGCCGACCGTCGATGCCCAGGCGCAGGCTTCGGTCCT
CGTCAGCTTCGTGCTGGGCCGCTTGCAGCGCTATGCGCGTTCGGGCTTCAAGCGCCTGCCGAGCGAACACCTCGACGCGG
CACTGCGGCAACTCGCCACCTGA

Upstream 100 bases:

>100_bases
CCCGAAGTAGGTGCGCGCTTGCGTCGAAAGCCCGCTTATGTGTATGCAAGAATTCGCTCGCTTTCGACGCTAGCCACCCA
CTTCCTCCCCGCCCGCGCGC

Downstream 100 bases:

>100_bases
TCCGGCCCCGCCCCGGCGAGGGGCTTCGGCGCCCGCCCCTACACTCGGCGGCCATGAATCCCGAGTTTCTTTCCTTGATG
CAGCAGGCCGAGCGCGTGCT

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSDTPIPEPLDAADDTPAEGVAAAAPVRKRPKPGERRIQILQTLASMLEQPGAERITTAALAAKLDVSEAALYRHFASKA
QMFEGLIDFIESSVFTLVNQIVERDTDPRDQVHKMTTVLLQFGEKNPGMSRVMAGDALVFENERLTARMNQFFDRFESQL
RQSLRALAEAGGSQTPTVDAQAQASVLVSFVLGRLQRYARSGFKRLPSEHLDAALRQLAT

Sequences:

>Translated_220_residues
MSDTPIPEPLDAADDTPAEGVAAAAPVRKRPKPGERRIQILQTLASMLEQPGAERITTAALAAKLDVSEAALYRHFASKA
QMFEGLIDFIESSVFTLVNQIVERDTDPRDQVHKMTTVLLQFGEKNPGMSRVMAGDALVFENERLTARMNQFFDRFESQL
RQSLRALAEAGGSQTPTVDAQAQASVLVSFVLGRLQRYARSGFKRLPSEHLDAALRQLAT
>Mature_219_residues
SDTPIPEPLDAADDTPAEGVAAAAPVRKRPKPGERRIQILQTLASMLEQPGAERITTAALAAKLDVSEAALYRHFASKAQ
MFEGLIDFIESSVFTLVNQIVERDTDPRDQVHKMTTVLLQFGEKNPGMSRVMAGDALVFENERLTARMNQFFDRFESQLR
QSLRALAEAGGSQTPTVDAQAQASVLVSFVLGRLQRYARSGFKRLPSEHLDAALRQLAT

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=188, Percent_Identity=47.3404255319149, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24211; Mature: 24080

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTPIPEPLDAADDTPAEGVAAAAPVRKRPKPGERRIQILQTLASMLEQPGAERITTAA
CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
LAAKLDVSEAALYRHFASKAQMFEGLIDFIESSVFTLVNQIVERDTDPRDQVHKMTTVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QFGEKNPGMSRVMAGDALVFENERLTARMNQFFDRFESQLRQSLRALAEAGGSQTPTVDA
HHCCCCCCHHHHHHCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
QAQASVLVSFVLGRLQRYARSGFKRLPSEHLDAALRQLAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SDTPIPEPLDAADDTPAEGVAAAAPVRKRPKPGERRIQILQTLASMLEQPGAERITTAA
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
LAAKLDVSEAALYRHFASKAQMFEGLIDFIESSVFTLVNQIVERDTDPRDQVHKMTTVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QFGEKNPGMSRVMAGDALVFENERLTARMNQFFDRFESQLRQSLRALAEAGGSQTPTVDA
HHCCCCCCHHHHHHCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
QAQASVLVSFVLGRLQRYARSGFKRLPSEHLDAALRQLAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA