Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265332
Identifier: 124265332
GI number: 124265332
Start: 144446
End: 145408
Strand: Direct
Name: 124265332
Synonym: Mpe_A0139
Alternate gene names: NA
Gene position: 144446-145408 (Clockwise)
Preceding gene: 124265330
Following gene: 124265333
Centisome position: 3.57
GC content: 63.86
Gene sequence:
>963_bases ATGCAAAACTTTCTCGACCCCGCGATCCTGTTCTTTGTATTTGGCCTCGTCGCCGGCGCACTGCGTTCGAACCTCGAGAT TCCGCCTCCCATCGCGCGCTTCCTGTCGCTGTATCTGCTCATGGCGCTCGGCCTGAAAGGCGGCTTTGCGCTAGCCAAGT CGGGCTTGACGACTGAGGTGGCACTGAGCCTGGGGTGCGCATTGACGCTCTCAGTCCTCGTGCCGGCCATCGGCTACGCG CTTCTCGTGCAGCGGCTGTCGCGCTTTGACGCCGCAGCCATTGCCGCCACGTACGGCTCGGTCAGCGCGGTCACTTTCAT TACCGCGGTTCAGTATCTGGAGACGCGAGGCACTCCCTACGGTGGACACATGGCGGCGGCGATGGCGCTGATGGAGTCGC CGGCGATCGTGATGGCGGTGGTACTCGCGAACCTCGCCCGCCGCCGGAAGGGACCATGCGCGGCTGGCCAGCCGCACGGC CTTGGCAAGGTGTTGCACGAATCGTTCACCGACGGTGCGCAATTGCTGCTGCTGGGGGCGATGGTGGTTGGCTTGGTGAC CGGTGAGGCAGGCCAGAAGGCGATGCAACCGTTCTCCGGCGATCTGTTCAAGGGCATGCTCGCGTTCTTCCTGCTCGACA TGGGTCTTCTCGCAGCGCGCAATCTCGGCGCCTTGAAGGGCACGTCGCTATGGCTGTTGGTTTATGCAATCGGTGGACCA CTGGTGCACGCGTCACTTGCATTGGCGTTCGCCGCCGCCGCCGGCCTGTCGGTCGGGAATGCAACGCTGCTGATGGTGCT GGCCGGGAGCGCGTCGTACATCGCCGTGCCGGCAGTGGTGCGCCAGGCGATCCCGGAGGCCAACCCGTCGCTCTACTTCG GCATGTCACTCGGGCTGACGTTCCCGTTCAACATCCTCATCGGCATTCCACTCTATTCGTCATTGGCGCAACGCATGGCG TGA
Upstream 100 bases:
>100_bases CGGGCGGTTGGGTCGATTGGATCATTGGAGAAGTCGATGTTTTGTATCAGAACATATCACTTGTTGAGGCAATTGAACGG CCCGAGCATCACGCTCCGTC
Downstream 100 bases:
>100_bases TCGTGCGCTGACGTGGGGCGGCCACTGGACCACGTGGAACGGCAAAGTGACCCACTCGGTCGTTGAAGCAGGCCAGGCTC AAGTGACATTCACAGACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Sodium-Dependent Bicarbonate Transporter; Sodium Bicarbonate Cotransporter; Conserved Domain Protein; SBT Type Permease Sodium-Bicarbonate; Membrane Permease; Sodium Dependent Bicarbonate Transporter; Permease-Like Protein; Domain Transmembrane Protein
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MQNFLDPAILFFVFGLVAGALRSNLEIPPPIARFLSLYLLMALGLKGGFALAKSGLTTEVALSLGCALTLSVLVPAIGYA LLVQRLSRFDAAAIAATYGSVSAVTFITAVQYLETRGTPYGGHMAAAMALMESPAIVMAVVLANLARRRKGPCAAGQPHG LGKVLHESFTDGAQLLLLGAMVVGLVTGEAGQKAMQPFSGDLFKGMLAFFLLDMGLLAARNLGALKGTSLWLLVYAIGGP LVHASLALAFAAAAGLSVGNATLLMVLAGSASYIAVPAVVRQAIPEANPSLYFGMSLGLTFPFNILIGIPLYSSLAQRMA
Sequences:
>Translated_320_residues MQNFLDPAILFFVFGLVAGALRSNLEIPPPIARFLSLYLLMALGLKGGFALAKSGLTTEVALSLGCALTLSVLVPAIGYA LLVQRLSRFDAAAIAATYGSVSAVTFITAVQYLETRGTPYGGHMAAAMALMESPAIVMAVVLANLARRRKGPCAAGQPHG LGKVLHESFTDGAQLLLLGAMVVGLVTGEAGQKAMQPFSGDLFKGMLAFFLLDMGLLAARNLGALKGTSLWLLVYAIGGP LVHASLALAFAAAAGLSVGNATLLMVLAGSASYIAVPAVVRQAIPEANPSLYFGMSLGLTFPFNILIGIPLYSSLAQRMA >Mature_320_residues MQNFLDPAILFFVFGLVAGALRSNLEIPPPIARFLSLYLLMALGLKGGFALAKSGLTTEVALSLGCALTLSVLVPAIGYA LLVQRLSRFDAAAIAATYGSVSAVTFITAVQYLETRGTPYGGHMAAAMALMESPAIVMAVVLANLARRRKGPCAAGQPHG LGKVLHESFTDGAQLLLLGAMVVGLVTGEAGQKAMQPFSGDLFKGMLAFFLLDMGLLAARNLGALKGTSLWLLVYAIGGP LVHASLALAFAAAAGLSVGNATLLMVLAGSASYIAVPAVVRQAIPEANPSLYFGMSLGLTFPFNILIGIPLYSSLAQRMA
Specific function: Unknown
COG id: COG3329
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33087; Mature: 33087
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNFLDPAILFFVFGLVAGALRSNLEIPPPIARFLSLYLLMALGLKGGFALAKSGLTTEV CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHH ALSLGCALTLSVLVPAIGYALLVQRLSRFDAAAIAATYGSVSAVTFITAVQYLETRGTPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC GGHMAAAMALMESPAIVMAVVLANLARRRKGPCAAGQPHGLGKVLHESFTDGAQLLLLGA CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH MVVGLVTGEAGQKAMQPFSGDLFKGMLAFFLLDMGLLAARNLGALKGTSLWLLVYAIGGP HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCH LVHASLALAFAAAAGLSVGNATLLMVLAGSASYIAVPAVVRQAIPEANPSLYFGMSLGLT HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCC FPFNILIGIPLYSSLAQRMA CCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQNFLDPAILFFVFGLVAGALRSNLEIPPPIARFLSLYLLMALGLKGGFALAKSGLTTEV CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHH ALSLGCALTLSVLVPAIGYALLVQRLSRFDAAAIAATYGSVSAVTFITAVQYLETRGTPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC GGHMAAAMALMESPAIVMAVVLANLARRRKGPCAAGQPHGLGKVLHESFTDGAQLLLLGA CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH MVVGLVTGEAGQKAMQPFSGDLFKGMLAFFLLDMGLLAARNLGALKGTSLWLLVYAIGGP HHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCH LVHASLALAFAAAAGLSVGNATLLMVLAGSASYIAVPAVVRQAIPEANPSLYFGMSLGLT HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCC FPFNILIGIPLYSSLAQRMA CCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA