Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

Click here to switch to the map view.

The map label for this gene is 124265330

Identifier: 124265330

GI number: 124265330

Start: 142835

End: 143206

Strand: Direct

Name: 124265330

Synonym: Mpe_A0137

Alternate gene names: NA

Gene position: 142835-143206 (Clockwise)

Preceding gene: 124265329

Following gene: 124265332

Centisome position: 3.53

GC content: 65.86

Gene sequence:

>372_bases
ATGAAATACCTCGGTCTCGCCTACTTCACCCCCGAAAAGTTTGCCGCGCTGGCGCCGGACGACGTCAAGGCGCTGGTGAG
CCAATGCCCGCCGCTGGACGAGAAGATGCGCGCGACCGGCAAGGTCCTGGTGTCCGCGTCGCTCGGCGACCTGGAGCGCT
GGCGAACGCTGCGCCCGCGCGGCGGCAAGACGCATGTCAGCGATGGGCCCTACACCGAGTCGAAGGAAGTGGCCGGCGGC
CTCTTCATCATCGAAGCGGACACCCCTGAAGAGGCATTGCGCATCGCATCCATGCACCCGGCCGCCACGCTCGGCGAAGA
GGGCGGATGGGCCGTCGAACTCATTCCGATGGATTTCTACCTGGCCCGATGA

Upstream 100 bases:

>100_bases
GCAGATGACGGGGCGCTGACCCGACTTTCATGCACCTTGTCGATTTCAGGCCGCCCGCTTCGTCGTCAGTGCGTCCATCA
CCACTCCAAGGCAGCTCCCC

Downstream 100 bases:

>100_bases
GGGCCAGGGCGTAGGCCTCAGGAAGGCTGCGGCGCGCGCTTCTCCGCACGCACCGTTGCGGCTTCGTTTGTCATCGCGGC
GATGCGAGCTTCTGGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: YCII-Related Protein; YCII-Related; DGPF Domain Superfamily; DGPFAETKE Domain-Containing Protein

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKYLGLAYFTPEKFAALAPDDVKALVSQCPPLDEKMRATGKVLVSASLGDLERWRTLRPRGGKTHVSDGPYTESKEVAGG
LFIIEADTPEEALRIASMHPAATLGEEGGWAVELIPMDFYLAR

Sequences:

>Translated_123_residues
MKYLGLAYFTPEKFAALAPDDVKALVSQCPPLDEKMRATGKVLVSASLGDLERWRTLRPRGGKTHVSDGPYTESKEVAGG
LFIIEADTPEEALRIASMHPAATLGEEGGWAVELIPMDFYLAR
>Mature_123_residues
MKYLGLAYFTPEKFAALAPDDVKALVSQCPPLDEKMRATGKVLVSASLGDLERWRTLRPRGGKTHVSDGPYTESKEVAGG
LFIIEADTPEEALRIASMHPAATLGEEGGWAVELIPMDFYLAR

Specific function: Unknown

COG id: COG3795

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13408; Mature: 13408

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLGLAYFTPEKFAALAPDDVKALVSQCPPLDEKMRATGKVLVSASLGDLERWRTLRPR
CCCEEEEEECCCHHEECCCHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCHHHHHHCCCC
GGKTHVSDGPYTESKEVAGGLFIIEADTPEEALRIASMHPAATLGEEGGWAVELIPMDFY
CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECEEE
LAR
ECC
>Mature Secondary Structure
MKYLGLAYFTPEKFAALAPDDVKALVSQCPPLDEKMRATGKVLVSASLGDLERWRTLRPR
CCCEEEEEECCCHHEECCCHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCHHHHHHCCCC
GGKTHVSDGPYTESKEVAGGLFIIEADTPEEALRIASMHPAATLGEEGGWAVELIPMDFY
CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECEEE
LAR
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA