Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265333
Identifier: 124265333
GI number: 124265333
Start: 145726
End: 147861
Strand: Direct
Name: 124265333
Synonym: Mpe_A0140
Alternate gene names: NA
Gene position: 145726-147861 (Clockwise)
Preceding gene: 124265332
Following gene: 124265334
Centisome position: 3.6
GC content: 72.19
Gene sequence:
>2136_bases ATGTTCTTCCCCTCCCTGCGTCCGCGCGCCGTCATCCCGCTGCGCCCGCTGTCGCGCCCGGGCCGGCTGTGGGCCGTGGT CCTGGCGCTCGCCTGCCTGGCGAGCCTGCTGCTCGTCGCGCTGCCGGCGCAGGCCGATGACGCCGACGCGCGGCGCGCCG AGAGCCCGTACTTCTTCGTCAAGAGCGACGACCCGAGCGTCGACCGCCTGCCGCTGAAGGCCACCGAGGTCGACGCGCGC ATCGCCGGGCCGATCGCCGACGTCACGGTGACGCAGCGCTACCGCAACGAGGGCCAGCGTCCCATCGAGGCGCGCTATGT CTTCCCCGGCTCCACGCAGGCCGCGGTGCACGCGATGACGGTGCGCGTCGGCCACCGCGTGATCGTCGCCGACATCCGCG AGAAGCAGCGCGCCCGCATCGAGTTCGAGGCCGCCAAGCGCGAAGGCAAGACCGCCGCGCTGCTGGAGCAGGAGCGGCCC AACGTGTTCTCGATGAACGTGGCCAACATCCTGCCGGGCGACGAGGTGGCGGTGGAGCTGCGCTACACCGAGCTGCTGCC GCCCACCGAGGGCCGCTACCAGTTCGTGTTCCCCACCGTGGTGGGCCCGCGCTATCGCTCCCCCGCCAACAAGGTCGCAA CCACTGAAGAGCAAGCAAACGGCACGGCAGCGCCGTCCGGCAGCTTCCCCGCCGTGCCCTACCTGCCCGCGGGCGAGGCG TCGGACACCCGCTTCGACCTGCGCGTGGCCTTCGCCTCGCCGCTGCCGGTGAGCGGCCTGCGCTCCAGCTCCCACCAGAT CGAGGTGGAAGGCGAAGGCAGCAACGGCGCGCGCGTCGCGCTGGGCGGTGACGCGGAGTCCTCCCGCCACAACGGCAACC GCGATTTCATCCTCGACTACCGCCTCGCCGGTGACGGCATCGCCTCGGGCCTCACGCTGTTCCCGGGCGCGCCCGGCGAG GAGAACTTCTTCCTCGCGATGGTGGAGCCGCCCCGGGCCATCGCCACCACGCAGATCAACCCGCGCGACTACGTGTTCGT GGTCGACATCTCGGGTTCGATGCACGGCTACCCGCTCGACACCGCCAAGACGCTGCTGCGCCACCTGATCGGCGGGCTGC GTCCCAGCGACACGTTCAACGTGCTGCTGTTCTCGGGCAGCAACCGCATGCTCAACGAGACCTCGGTGCCGGCCACGCAG GCCAACGTCGCGCAGGCGCTGCGCACCATTGCGCAGATGGGCGGCAGCGGCAGCACCGAGATCGTGCCGGCGCTCAAGCG CGTGGCCGCGCTGCCCAAGTCGCCCGACGTGTCGCGCAGCGTGATCGTGGTGACCGACGGCTACGTCACGGTGGAGAGCG AGGTGTTCCAGCTCATCCGCAGGAACCTCGGCCAGACCAACGTGTTCGCGTTCGGCATCGGCAGCTCGGTCAACCGCCAT CTCATCGAGGGCATTGCACGCGCCGGCCAGGGCGAGCCCTTCATCGTCACGCGGCCCGAGCAGGCTGCCGCGCAGGCCGA GCGCCTGCGCCGCATGATCGACGCGCCGGTGCTCACGCAGGTGAAGGCGCGCTTCGAGGGCCTGGACACCTACGACGTGG AACCCGAGCGCCTGCCTGACGTGCTGGGTGGCCGCCCGGTGCTGGTGTTCGGCAAGTGGCGCGGCGAGCCGCGCGGCCAG CTCGTCGTCGAAGGCCAGGCGGCCCACGGCGCCTGGCAGGCGATGCTGCCGGTCGCCACGCCCGACGCGCAGGCCGTGGC GCTGCGCCACCTGTGGGCGCGCCACCGCATCCAGTCGCTGTCGGACCAGGAGGCGCTGCAGGGCGGCGACACGCAGCGCG AGGCCATCACCGCGCTGGGCCTGCGCTACAGCCTGCTCACGCAGTACACCAGCTTCATCGCCGTGGACCGCGTGGTGCGC AACCCCGCCGGCGGCAGCACGCCGGTGGACCAGCCCTCGCCCCTGCCGCAGGGCGTGAGCAACCTGGCCATCGGCGCCGA GGTGCCCAGCACGCCGGAGCCTTCGGCCTGGATCGCGCTGGGCGTGGTGCTGGTGCTGCTGGGTGCGGCGGCCTGGCACC GCGGCGGATCTAGCGCCAAGCGCCTGTGGCGCAAGCCGCGGCGCCTGGTGCGGTGA
Upstream 100 bases:
>100_bases GTCTTCACACACCCTCTCCCCAACTTCCTCGTCTTTTCTCACCCCCCGCGGAAGCTCCTCCCCGTGCCCGCCTCGCGGCA CGTCGCCTCAGGAGCCCGCC
Downstream 100 bases:
>100_bases GCGGGGACCTCAACCATGCATTCGCAACCCTATCGACTGCGTCTCACCGGCACGCCCGGCCTGGCCGCGCTGCCTGCCGG GGCCTGGCTGGCGCTGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: Von Willebrand Factor Type A Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin; Inter-Alpha-Trypsin Inhibitor Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin Domain Protein; Von Willebrand Factor Type A; Cell Wall Anchor Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin Domain-Containing Protein; Von Willebrand Factor Type A Domain Protein; LPXTG-Motif Cell Wall Anchor Domain-Containing Protein; Transmembrane Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; Vault Protein Inter-Alpha-Trypsin Domain; Protein ContAining A Von Willebrand Factor Type A Domain; Inter-Alpha-Trypsin Inhibitor Domain Protein; Von Willebrand Factor
Number of amino acids: Translated: 711; Mature: 711
Protein sequence:
>711_residues MFFPSLRPRAVIPLRPLSRPGRLWAVVLALACLASLLLVALPAQADDADARRAESPYFFVKSDDPSVDRLPLKATEVDAR IAGPIADVTVTQRYRNEGQRPIEARYVFPGSTQAAVHAMTVRVGHRVIVADIREKQRARIEFEAAKREGKTAALLEQERP NVFSMNVANILPGDEVAVELRYTELLPPTEGRYQFVFPTVVGPRYRSPANKVATTEEQANGTAAPSGSFPAVPYLPAGEA SDTRFDLRVAFASPLPVSGLRSSSHQIEVEGEGSNGARVALGGDAESSRHNGNRDFILDYRLAGDGIASGLTLFPGAPGE ENFFLAMVEPPRAIATTQINPRDYVFVVDISGSMHGYPLDTAKTLLRHLIGGLRPSDTFNVLLFSGSNRMLNETSVPATQ ANVAQALRTIAQMGGSGSTEIVPALKRVAALPKSPDVSRSVIVVTDGYVTVESEVFQLIRRNLGQTNVFAFGIGSSVNRH LIEGIARAGQGEPFIVTRPEQAAAQAERLRRMIDAPVLTQVKARFEGLDTYDVEPERLPDVLGGRPVLVFGKWRGEPRGQ LVVEGQAAHGAWQAMLPVATPDAQAVALRHLWARHRIQSLSDQEALQGGDTQREAITALGLRYSLLTQYTSFIAVDRVVR NPAGGSTPVDQPSPLPQGVSNLAIGAEVPSTPEPSAWIALGVVLVLLGAAAWHRGGSSAKRLWRKPRRLVR
Sequences:
>Translated_711_residues MFFPSLRPRAVIPLRPLSRPGRLWAVVLALACLASLLLVALPAQADDADARRAESPYFFVKSDDPSVDRLPLKATEVDAR IAGPIADVTVTQRYRNEGQRPIEARYVFPGSTQAAVHAMTVRVGHRVIVADIREKQRARIEFEAAKREGKTAALLEQERP NVFSMNVANILPGDEVAVELRYTELLPPTEGRYQFVFPTVVGPRYRSPANKVATTEEQANGTAAPSGSFPAVPYLPAGEA SDTRFDLRVAFASPLPVSGLRSSSHQIEVEGEGSNGARVALGGDAESSRHNGNRDFILDYRLAGDGIASGLTLFPGAPGE ENFFLAMVEPPRAIATTQINPRDYVFVVDISGSMHGYPLDTAKTLLRHLIGGLRPSDTFNVLLFSGSNRMLNETSVPATQ ANVAQALRTIAQMGGSGSTEIVPALKRVAALPKSPDVSRSVIVVTDGYVTVESEVFQLIRRNLGQTNVFAFGIGSSVNRH LIEGIARAGQGEPFIVTRPEQAAAQAERLRRMIDAPVLTQVKARFEGLDTYDVEPERLPDVLGGRPVLVFGKWRGEPRGQ LVVEGQAAHGAWQAMLPVATPDAQAVALRHLWARHRIQSLSDQEALQGGDTQREAITALGLRYSLLTQYTSFIAVDRVVR NPAGGSTPVDQPSPLPQGVSNLAIGAEVPSTPEPSAWIALGVVLVLLGAAAWHRGGSSAKRLWRKPRRLVR >Mature_711_residues MFFPSLRPRAVIPLRPLSRPGRLWAVVLALACLASLLLVALPAQADDADARRAESPYFFVKSDDPSVDRLPLKATEVDAR IAGPIADVTVTQRYRNEGQRPIEARYVFPGSTQAAVHAMTVRVGHRVIVADIREKQRARIEFEAAKREGKTAALLEQERP NVFSMNVANILPGDEVAVELRYTELLPPTEGRYQFVFPTVVGPRYRSPANKVATTEEQANGTAAPSGSFPAVPYLPAGEA SDTRFDLRVAFASPLPVSGLRSSSHQIEVEGEGSNGARVALGGDAESSRHNGNRDFILDYRLAGDGIASGLTLFPGAPGE ENFFLAMVEPPRAIATTQINPRDYVFVVDISGSMHGYPLDTAKTLLRHLIGGLRPSDTFNVLLFSGSNRMLNETSVPATQ ANVAQALRTIAQMGGSGSTEIVPALKRVAALPKSPDVSRSVIVVTDGYVTVESEVFQLIRRNLGQTNVFAFGIGSSVNRH LIEGIARAGQGEPFIVTRPEQAAAQAERLRRMIDAPVLTQVKARFEGLDTYDVEPERLPDVLGGRPVLVFGKWRGEPRGQ LVVEGQAAHGAWQAMLPVATPDAQAVALRHLWARHRIQSLSDQEALQGGDTQREAITALGLRYSLLTQYTSFIAVDRVVR NPAGGSTPVDQPSPLPQGVSNLAIGAEVPSTPEPSAWIALGVVLVLLGAAAWHRGGSSAKRLWRKPRRLVR
Specific function: Unknown
COG id: COG2304
COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI38195080, Length=630, Percent_Identity=26.984126984127, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI194306644, Length=630, Percent_Identity=26.984126984127, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI112789550, Length=600, Percent_Identity=23.6666666666667, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI38195082, Length=418, Percent_Identity=28.9473684210526, Blast_Score=122, Evalue=1e-27, Organism=Homo sapiens, GI70778918, Length=651, Percent_Identity=22.1198156682028, Blast_Score=109, Evalue=1e-23, Organism=Homo sapiens, GI38348336, Length=623, Percent_Identity=23.7560192616372, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI133925809, Length=596, Percent_Identity=22.6510067114094, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI31542984, Length=587, Percent_Identity=23.5093696763203, Blast_Score=100, Evalue=9e-21, Organism=Homo sapiens, GI262050538, Length=587, Percent_Identity=23.5093696763203, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI210147462, Length=544, Percent_Identity=21.875, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI153945711, Length=331, Percent_Identity=24.4712990936556, Blast_Score=78, Evalue=3e-14, Organism=Homo sapiens, GI153945780, Length=331, Percent_Identity=24.4712990936556, Blast_Score=78, Evalue=4e-14, Organism=Homo sapiens, GI49355778, Length=331, Percent_Identity=24.4712990936556, Blast_Score=78, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76848; Mature: 76848
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFPSLRPRAVIPLRPLSRPGRLWAVVLALACLASLLLVALPAQADDADARRAESPYFFV CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEE KSDDPSVDRLPLKATEVDARIAGPIADVTVTQRYRNEGQRPIEARYVFPGSTQAAVHAMT ECCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHEEEE VRVGHRVIVADIREKQRARIEFEAAKREGKTAALLEQERPNVFSMNVANILPGDEVAVEL EECCCEEEEEEHHHHHHHEEEEHHHHCCCCEEEHHHHCCCCEEEEEHHHCCCCCCEEEEE RYTELLPPTEGRYQFVFPTVVGPRYRSPANKVATTEEQANGTAAPSGSFPAVPYLPAGEA EEEECCCCCCCCEEEEEECCCCCCCCCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCC SDTRFDLRVAFASPLPVSGLRSSSHQIEVEGEGSNGARVALGGDAESSRHNGNRDFILDY CCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEE RLAGDGIASGLTLFPGAPGEENFFLAMVEPPRAIATTQINPRDYVFVVDISGSMHGYPLD EECCCCHHCCCEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCH TAKTLLRHLIGGLRPSDTFNVLLFSGSNRMLNETSVPATQANVAQALRTIAQMGGSGSTE HHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCH IVPALKRVAALPKSPDVSRSVIVVTDGYVTVESEVFQLIRRNLGQTNVFAFGIGSSVNRH HHHHHHHHHCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHH LIEGIARAGQGEPFIVTRPEQAAAQAERLRRMIDAPVLTQVKARFEGLDTYDVEPERLPD HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHH VLGGRPVLVFGKWRGEPRGQLVVEGQAAHGAWQAMLPVATPDAQAVALRHLWARHRIQSL HHCCCEEEEEEECCCCCCCEEEEECCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHC SDQEALQGGDTQREAITALGLRYSLLTQYTSFIAVDRVVRNPAGGSTPVDQPSPLPQGVS CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH NLAIGAEVPSTPEPSAWIALGVVLVLLGAAAWHRGGSSAKRLWRKPRRLVR HEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MFFPSLRPRAVIPLRPLSRPGRLWAVVLALACLASLLLVALPAQADDADARRAESPYFFV CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEE KSDDPSVDRLPLKATEVDARIAGPIADVTVTQRYRNEGQRPIEARYVFPGSTQAAVHAMT ECCCCCCCCCCCCHHCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHEEEE VRVGHRVIVADIREKQRARIEFEAAKREGKTAALLEQERPNVFSMNVANILPGDEVAVEL EECCCEEEEEEHHHHHHHEEEEHHHHCCCCEEEHHHHCCCCEEEEEHHHCCCCCCEEEEE RYTELLPPTEGRYQFVFPTVVGPRYRSPANKVATTEEQANGTAAPSGSFPAVPYLPAGEA EEEECCCCCCCCEEEEEECCCCCCCCCCCHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCC SDTRFDLRVAFASPLPVSGLRSSSHQIEVEGEGSNGARVALGGDAESSRHNGNRDFILDY CCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEE RLAGDGIASGLTLFPGAPGEENFFLAMVEPPRAIATTQINPRDYVFVVDISGSMHGYPLD EECCCCHHCCCEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCH TAKTLLRHLIGGLRPSDTFNVLLFSGSNRMLNETSVPATQANVAQALRTIAQMGGSGSTE HHHHHHHHHHCCCCCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCH IVPALKRVAALPKSPDVSRSVIVVTDGYVTVESEVFQLIRRNLGQTNVFAFGIGSSVNRH HHHHHHHHHCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHCCCCEEEEEECCCCHHHH LIEGIARAGQGEPFIVTRPEQAAAQAERLRRMIDAPVLTQVKARFEGLDTYDVEPERLPD HHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHH VLGGRPVLVFGKWRGEPRGQLVVEGQAAHGAWQAMLPVATPDAQAVALRHLWARHRIQSL HHCCCEEEEEEECCCCCCCEEEEECCCCCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHC SDQEALQGGDTQREAITALGLRYSLLTQYTSFIAVDRVVRNPAGGSTPVDQPSPLPQGVS CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH NLAIGAEVPSTPEPSAWIALGVVLVLLGAAAWHRGGSSAKRLWRKPRRLVR HEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA