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The map label for this gene is ctpA [H]

Identifier: 124025443

GI number: 124025443

Start: 677452

End: 678756

Strand: Direct

Name: ctpA [H]

Synonym: NATL1_07361

Alternate gene names: 124025443

Gene position: 677452-678756 (Clockwise)

Preceding gene: 124025441

Following gene: 124025446

Centisome position: 36.33

GC content: 32.41

Gene sequence:

>1305_bases
ATGTTGAAGAGATTTTTAAAAATATGTTTACTTATAGCTATTTGCCCTTCACCTTCTTTCTCTTTCCAGGCTAATTCCTC
TACTTTGATTACTAACAATCCAAAGGAGATTATTGATCAGGTATGGCAAATTATATATCGCGACTTTTTGGACTATTCAG
GAAAATATAAGGCAGAAGATTGGATTAAATTAAGAAAGGAAATACTATCAACCAAATATTTTGATAATGACGAAGCATAC
ATTGCCATTAAAGATATGTTGACAGAATTAGATGATCCTTATACCAGATTTTTAGATCCTAAAGAATTCAATGAAATGAG
AATAGATACAACGGGAGAATTGATGGGAGTAGGTATTCAAATTTCTCTAGATGAAGTTAGTAATCAAATTGTTGTCGTAT
CACCAATAGAGGGAACCCCAGCCTTTCTCGCGGGAATTAAACCGAAGGATATAATTGTATCTATAGATGGTAAGGCTATC
GATGGTCTGAGCATAGACAGTACTGTTAAACTTATTCGAGGTAAAAAAGGAACGAAGGTTGAACTAGGTATTATTAGAGA
CGAGGAGTTATTAAATATCTCATTAATACGAGATAGAATTGAAATTAATGTTGTTGATAGTCGAATAAATAATACAGTTT
CAGGCGCGAAAATTGGTTATGTAAGGTTAAAACAATTTAATGCCAAATCTCCAAAAGAAATGAGTTTATCTATTAATAAA
TTAGAAAAACAACAACCTTTTGGTTATGTATTAGACCTTAGAAGTAATCCTGGTGGTTTGCTTGAGGCAAGTATTGAAAT
AGCGAGACAATGGATAAATACAGGAATTATTGTTAGTACTAAAACAAAAGATGGTATTACTGATATTCGGAAAGCAAAAA
GTAGAGCCTTAACTAACAGACCAGTTGTGGTTTTAATCGATGAAGGATCTGCGAGTGCTAGTGAGATTCTCTCTGGAGCA
ATTAAAGATAATAAAAGAGGAGTATTGGTTGGGAAAAAGACTTTTGGTAAAGGACTAGTTCAGTCTGTCAGGTCTCTTTC
TGATGGCTCAGGTCTAACAGTTACGGTCGCAAAATATTTAACACCAAGTGGTAAAGATATTAATAAAAATGGAATAGCAC
CAGATATCAGAGCAGATCTTTTGTTAAATGAAAAAAACAAATTAACAAATGCAGATCTAGGAACTTTAAAAGATAGTCAA
TATGTTGCGGCTGAAAATATATTACTTAAAAAGTTTAAAATTGAGAGTAATAAAAATTCTTATAATCCCTTGAAATCAAA
TTTGGGCTATGCCCTAAAAAACTAG

Upstream 100 bases:

>100_bases
GCATTGGTTGATTTAATTAAAGAGGATGGTAAATGGGTAGATCCTTAAAATAGAATATATCTTTTTATTGTTTTAGTATT
AGAAAAATTATTTGATAATT

Downstream 100 bases:

>100_bases
TTAGAACTTGTCAATTCTCCTATATCCATACCAGTCAGGAATAATTTTTTCGCTTCTTTCTTGAACGTCTGGTATCAGCT
TTATTTCCCAATTCTTTATT

Product: carboxyl-terminal processing protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MLKRFLKICLLIAICPSPSFSFQANSSTLITNNPKEIIDQVWQIIYRDFLDYSGKYKAEDWIKLRKEILSTKYFDNDEAY
IAIKDMLTELDDPYTRFLDPKEFNEMRIDTTGELMGVGIQISLDEVSNQIVVVSPIEGTPAFLAGIKPKDIIVSIDGKAI
DGLSIDSTVKLIRGKKGTKVELGIIRDEELLNISLIRDRIEINVVDSRINNTVSGAKIGYVRLKQFNAKSPKEMSLSINK
LEKQQPFGYVLDLRSNPGGLLEASIEIARQWINTGIIVSTKTKDGITDIRKAKSRALTNRPVVVLIDEGSASASEILSGA
IKDNKRGVLVGKKTFGKGLVQSVRSLSDGSGLTVTVAKYLTPSGKDINKNGIAPDIRADLLLNEKNKLTNADLGTLKDSQ
YVAAENILLKKFKIESNKNSYNPLKSNLGYALKN

Sequences:

>Translated_434_residues
MLKRFLKICLLIAICPSPSFSFQANSSTLITNNPKEIIDQVWQIIYRDFLDYSGKYKAEDWIKLRKEILSTKYFDNDEAY
IAIKDMLTELDDPYTRFLDPKEFNEMRIDTTGELMGVGIQISLDEVSNQIVVVSPIEGTPAFLAGIKPKDIIVSIDGKAI
DGLSIDSTVKLIRGKKGTKVELGIIRDEELLNISLIRDRIEINVVDSRINNTVSGAKIGYVRLKQFNAKSPKEMSLSINK
LEKQQPFGYVLDLRSNPGGLLEASIEIARQWINTGIIVSTKTKDGITDIRKAKSRALTNRPVVVLIDEGSASASEILSGA
IKDNKRGVLVGKKTFGKGLVQSVRSLSDGSGLTVTVAKYLTPSGKDINKNGIAPDIRADLLLNEKNKLTNADLGTLKDSQ
YVAAENILLKKFKIESNKNSYNPLKSNLGYALKN
>Mature_434_residues
MLKRFLKICLLIAICPSPSFSFQANSSTLITNNPKEIIDQVWQIIYRDFLDYSGKYKAEDWIKLRKEILSTKYFDNDEAY
IAIKDMLTELDDPYTRFLDPKEFNEMRIDTTGELMGVGIQISLDEVSNQIVVVSPIEGTPAFLAGIKPKDIIVSIDGKAI
DGLSIDSTVKLIRGKKGTKVELGIIRDEELLNISLIRDRIEINVVDSRINNTVSGAKIGYVRLKQFNAKSPKEMSLSINK
LEKQQPFGYVLDLRSNPGGLLEASIEIARQWINTGIIVSTKTKDGITDIRKAKSRALTNRPVVVLIDEGSASASEILSGA
IKDNKRGVLVGKKTFGKGLVQSVRSLSDGSGLTVTVAKYLTPSGKDINKNGIAPDIRADLLLNEKNKLTNADLGTLKDSQ
YVAAENILLKKFKIESNKNSYNPLKSNLGYALKN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=309, Percent_Identity=30.7443365695793, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48032; Mature: 48032

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRFLKICLLIAICPSPSFSFQANSSTLITNNPKEIIDQVWQIIYRDFLDYSGKYKAED
CHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHH
WIKLRKEILSTKYFDNDEAYIAIKDMLTELDDPYTRFLDPKEFNEMRIDTTGELMGVGIQ
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHCCCCHHHCCCCHHHCCEECCCCCCEEEEEEE
ISLDEVSNQIVVVSPIEGTPAFLAGIKPKDIIVSIDGKAIDGLSIDSTVKLIRGKKGTKV
EEHHHHCCCEEEEECCCCCCHHHCCCCCCEEEEEECCCEECCCCCHHHHHHHCCCCCCEE
ELGIIRDEELLNISLIRDRIEINVVDSRINNTVSGAKIGYVRLKQFNAKSPKEMSLSINK
EEEEECCCHHEEEEEEEEEEEEEEEEHHHCCCCCCCEEEEEEEEECCCCCCHHHEEEHHH
LEKQQPFGYVLDLRSNPGGLLEASIEIARQWINTGIIVSTKTKDGITDIRKAKSRALTNR
HHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
PVVVLIDEGSASASEILSGAIKDNKRGVLVGKKTFGKGLVQSVRSLSDGSGLTVTVAKYL
CEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHC
TPSGKDINKNGIAPDIRADLLLNEKNKLTNADLGTLKDSQYVAAENILLKKFKIESNKNS
CCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCEEHHHHEEEEEEEECCCCCC
YNPLKSNLGYALKN
CCCHHHCCCCCCCC
>Mature Secondary Structure
MLKRFLKICLLIAICPSPSFSFQANSSTLITNNPKEIIDQVWQIIYRDFLDYSGKYKAED
CHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHH
WIKLRKEILSTKYFDNDEAYIAIKDMLTELDDPYTRFLDPKEFNEMRIDTTGELMGVGIQ
HHHHHHHHHHHCCCCCCCCEEEHHHHHHHCCCCHHHCCCCHHHCCEECCCCCCEEEEEEE
ISLDEVSNQIVVVSPIEGTPAFLAGIKPKDIIVSIDGKAIDGLSIDSTVKLIRGKKGTKV
EEHHHHCCCEEEEECCCCCCHHHCCCCCCEEEEEECCCEECCCCCHHHHHHHCCCCCCEE
ELGIIRDEELLNISLIRDRIEINVVDSRINNTVSGAKIGYVRLKQFNAKSPKEMSLSINK
EEEEECCCHHEEEEEEEEEEEEEEEEHHHCCCCCCCEEEEEEEEECCCCCCHHHEEEHHH
LEKQQPFGYVLDLRSNPGGLLEASIEIARQWINTGIIVSTKTKDGITDIRKAKSRALTNR
HHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
PVVVLIDEGSASASEILSGAIKDNKRGVLVGKKTFGKGLVQSVRSLSDGSGLTVTVAKYL
CEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHC
TPSGKDINKNGIAPDIRADLLLNEKNKLTNADLGTLKDSQYVAAENILLKKFKIESNKNS
CCCCCCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCEEHHHHEEEEEEEECCCCCC
YNPLKSNLGYALKN
CCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]