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The map label for this gene is cpeC [H]

Identifier: 124025105

GI number: 124025105

Start: 362407

End: 363198

Strand: Reverse

Name: cpeC [H]

Synonym: NATL1_03921

Alternate gene names: 124025105

Gene position: 363198-362407 (Counterclockwise)

Preceding gene: 124025106

Following gene: 124025104

Centisome position: 19.48

GC content: 29.8

Gene sequence:

>792_bases
ATGTCAAGTATTCCTTTTAAAGCGCTTAAAATAGGAGCAGAGGCTATTAATAAGGATCCAGTTAAGTTTAACAAAAGTAG
AGTATCTGGAAGTAAAAAAACAACGTATGGATTACATATAAGAGGAGCATCAATGCCAGGAGAAAAAGAAAAATTCACAG
TCACATCTAAAACCAAACCTAAGCAATTCGAAAACTTAATTCACAACAATGTTATGAGCAGTTACAGAAGGGATAAGATT
GAAAGTTATAAATACAAAATACTAAATAAGGAAAGTGCTGGAATAAATATGCTTCAAATCAATGAATTTGTTCCTATTGA
TGATGATGCATTACTTGTAGCAATCAATGCATTATATAAACACATCTTTGGAAACTTATCATTAATGCAATCGGAGCGTC
CAATTGATATTGAAAGGAAGCTAAGGAATGGTGATCTTACAGTAAGAGAATTTACAAGGAAAATTTGTAAATCAACTATT
TATAGAAATTTCTACTTTGATGGTATTAGCCAATATAAAGCTATCAAGTTAAGATACAAGCATATTCTTGGTAGGCCCAT
CAAAAGTAAAGACGAAGTAACTCAAAGTTCAAATATTATAAATAACCTAGGTTTTGAAGAGCATATTGATTTTCTAATAG
ATTCTAATGAATATAATAAAATTTTTGGCGAAGATATTGTTCCATATATGAGATCATGGAATTCTCCAACTGGTTTTAAA
ACACAAAGTTTCCTAGAAACTTCATACTTAACAAAAGCTTTTGCGACAAGTGATATTTGTACAATTATTTAA

Upstream 100 bases:

>100_bases
AAAAAATTATTAAGAAATTAAATAATATAGATAACTAAAAATAAAAAATTTATATTTATTCTCTTCATATTGTTAAACTA
AATTAGTATTAAGTATTGAT

Downstream 100 bases:

>100_bases
TCTTCTAAAAATAAATTAATAGCAATCTAATTAAAGTAGATGAATATTAAAGAATTTTTCTTAAAAAGTGTTGGGGAATG
GAATTCAATGAGAAGCGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSSIPFKALKIGAEAINKDPVKFNKSRVSGSKKTTYGLHIRGASMPGEKEKFTVTSKTKPKQFENLIHNNVMSSYRRDKI
ESYKYKILNKESAGINMLQINEFVPIDDDALLVAINALYKHIFGNLSLMQSERPIDIERKLRNGDLTVREFTRKICKSTI
YRNFYFDGISQYKAIKLRYKHILGRPIKSKDEVTQSSNIINNLGFEEHIDFLIDSNEYNKIFGEDIVPYMRSWNSPTGFK
TQSFLETSYLTKAFATSDICTII

Sequences:

>Translated_263_residues
MSSIPFKALKIGAEAINKDPVKFNKSRVSGSKKTTYGLHIRGASMPGEKEKFTVTSKTKPKQFENLIHNNVMSSYRRDKI
ESYKYKILNKESAGINMLQINEFVPIDDDALLVAINALYKHIFGNLSLMQSERPIDIERKLRNGDLTVREFTRKICKSTI
YRNFYFDGISQYKAIKLRYKHILGRPIKSKDEVTQSSNIINNLGFEEHIDFLIDSNEYNKIFGEDIVPYMRSWNSPTGFK
TQSFLETSYLTKAFATSDICTII
>Mature_262_residues
SSIPFKALKIGAEAINKDPVKFNKSRVSGSKKTTYGLHIRGASMPGEKEKFTVTSKTKPKQFENLIHNNVMSSYRRDKIE
SYKYKILNKESAGINMLQINEFVPIDDDALLVAINALYKHIFGNLSLMQSERPIDIERKLRNGDLTVREFTRKICKSTIY
RNFYFDGISQYKAIKLRYKHILGRPIKSKDEVTQSSNIINNLGFEEHIDFLIDSNEYNKIFGEDIVPYMRSWNSPTGFKT
QSFLETSYLTKAFATSDICTII

Specific function: Rod linker protein, associated with phycoerythrocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to medi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycoerythrin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 30268; Mature: 30137

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIPFKALKIGAEAINKDPVKFNKSRVSGSKKTTYGLHIRGASMPGEKEKFTVTSKTKP
CCCCCHHHHHHHHHHHCCCCCEECHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCH
KQFENLIHNNVMSSYRRDKIESYKYKILNKESAGINMLQINEFVPIDDDALLVAINALYK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
HIFGNLSLMQSERPIDIERKLRNGDLTVREFTRKICKSTIYRNFYFDGISQYKAIKLRYK
HHHCCCCEECCCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HILGRPIKSKDEVTQSSNIINNLGFEEHIDFLIDSNEYNKIFGEDIVPYMRSWNSPTGFK
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
TQSFLETSYLTKAFATSDICTII
HHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
SSIPFKALKIGAEAINKDPVKFNKSRVSGSKKTTYGLHIRGASMPGEKEKFTVTSKTKP
CCCCHHHHHHHHHHHCCCCCEECHHHCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCH
KQFENLIHNNVMSSYRRDKIESYKYKILNKESAGINMLQINEFVPIDDDALLVAINALYK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH
HIFGNLSLMQSERPIDIERKLRNGDLTVREFTRKICKSTIYRNFYFDGISQYKAIKLRYK
HHHCCCCEECCCCCCCHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HILGRPIKSKDEVTQSSNIINNLGFEEHIDFLIDSNEYNKIFGEDIVPYMRSWNSPTGFK
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCC
TQSFLETSYLTKAFATSDICTII
HHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1694529 [H]