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The map label for this gene is rsmB [H]

Identifier: 124027719

GI number: 124027719

Start: 841792

End: 843093

Strand: Reverse

Name: rsmB [H]

Synonym: Hbut_0843

Alternate gene names: 124027719

Gene position: 843093-841792 (Counterclockwise)

Preceding gene: 124027720

Following gene: 124027717

Centisome position: 50.57

GC content: 52.84

Gene sequence:

>1302_bases
ATGGAGAGACAAGTAAAGGTCATAGTAGACTTTAGTGCTCGTGTCCTCTACCATGTACTGACAAGGCATGTAAGCCATGA
TAGGGCCTACCAAGCTGCAGCGAGAGAGTACCGTAAAGCATTGAACATTGTACCGCCAAGGGTGCTCTACAAGGTCTCTC
ATGATATAGTATCGGACTACCACACGGTAAGGCACATAGAAAAGTACGTCTATGGCGCTACGGGCGGCTCCAAGAGGGCT
GCAAGGCTATGGCTAGCCCTCCTAGGCCCGGAGAAGGAGTACCTCCAGCCCTACATCGATGGAGTAGAGAGGCTGCGGAG
GAAACTGCTGAAGACACTGCCACGCCATGTGGAGAGTATAGAGGACGTTATTGAGACAGCAGGCTCTGAAGCTGAGAAAC
TTGCAATAAAATACTCTTTTCCCACCTGGTTTACCAAACTGATACTCCAACTTCTCGGCCCTTACAGTGCTGAAAGGCTC
TTGGCGTCTCTCAACGAGGAGAAGTGGTGGATAAGGGTCAATACGCTCAAGGCTGATCCGGATCGTGTTGCAGCCCGGCT
AGAGGAGAAAGGCGTCATAGTGCGCAGAGACCGGGATCTACCCTACATGCTGGAGGTTGTAGACTTTAGTGAACCACTAC
ACCATCTTGAGGAGATGTGGCGTGGCGAAATAGTGTTCCAGGACAAGGCCTCAGCAATGGTTGTCGAGGCCCTAGAGCCG
GAGCCTGGAGACGTGATATTGGACTTGGCTGCGGCCCCCGGCGTAAAGGATACGCTGGTGATGCAGCTCACTGAGAACAG
GGCGAGGATAATAGCTGTAGACGTCTCCTGGGCGCGTCTCCAGAGGACAAAGCGCCTACTACGCATGTATGGTGTTGATA
TTAGCCGTATCGAGGTAGTACAAGCAGACTCTACAACACTACACCTAAGGCTAAAACCGTCAAAAGTAATGCTAGATGCT
CCATGTACAAGCAGTGGTGCAGTGGGCAAGGATCCAGCAATAAAGCTCCACCTAGACGATCTCAACTGGGTTGCAAGGTT
CCCCCCACTCCAAGCTGCGATGCTGGAAACAGCGCTAAAGTACCGGGCTCCAGCAGTCTATGCTGTCTGCAGCATCCTAC
CCATGGAGGGTGAGGAGCAGGTAGTAAAGATTATTGAGCGTGGCGCAGCAAGCCTACGGAGACCAAGAATCCCCGCCGCC
CATGGCTATGCTGTTTACGGTGATGTAGCCCGCAAGACGGCAAGGTTCCTGCCAAGCCTGCACCAGACCCAGGGCTTCTT
CATATCACTCCTAGAACCCTAG

Upstream 100 bases:

>100_bases
TTTTGCGGGCTCTGGTAAGCCCACCTATCATCACTGGCTCATGATACAATATTGGCTGTATCCCGGTAACCCTGGTAGTT
CTCGGGTGCGTATATAGGCT

Downstream 100 bases:

>100_bases
GACGGTAATGGAGGAATGGTGGGCGACGTGCAATTCGTCTCCCGGCTCACCCAGCCGCCAGCGGCGGCGTCGCCGGGGCC
CTGACCCCCCGCCGTGTAGA

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MERQVKVIVDFSARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDYHTVRHIEKYVYGATGGSKRA
ARLWLALLGPEKEYLQPYIDGVERLRRKLLKTLPRHVESIEDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERL
LASLNEEKWWIRVNTLKADPDRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEALEP
EPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIEVVQADSTTLHLRLKPSKVMLDA
PCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETALKYRAPAVYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAA
HGYAVYGDVARKTARFLPSLHQTQGFFISLLEP

Sequences:

>Translated_433_residues
MERQVKVIVDFSARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDYHTVRHIEKYVYGATGGSKRA
ARLWLALLGPEKEYLQPYIDGVERLRRKLLKTLPRHVESIEDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERL
LASLNEEKWWIRVNTLKADPDRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEALEP
EPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIEVVQADSTTLHLRLKPSKVMLDA
PCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETALKYRAPAVYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAA
HGYAVYGDVARKTARFLPSLHQTQGFFISLLEP
>Mature_433_residues
MERQVKVIVDFSARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDYHTVRHIEKYVYGATGGSKRA
ARLWLALLGPEKEYLQPYIDGVERLRRKLLKTLPRHVESIEDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERL
LASLNEEKWWIRVNTLKADPDRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEALEP
EPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIEVVQADSTTLHLRLKPSKVMLDA
PCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETALKYRAPAVYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAA
HGYAVYGDVARKTARFLPSLHQTQGFFISLLEP

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=319, Percent_Identity=29.4670846394984, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI76150623, Length=319, Percent_Identity=29.4670846394984, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI270288816, Length=304, Percent_Identity=27.3026315789474, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI270288818, Length=302, Percent_Identity=27.1523178807947, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI8922322, Length=302, Percent_Identity=27.1523178807947, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI23199998, Length=304, Percent_Identity=27.3026315789474, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI32698918, Length=216, Percent_Identity=26.8518518518519, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI2367212, Length=351, Percent_Identity=27.0655270655271, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17536757, Length=308, Percent_Identity=27.5974025974026, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71998419, Length=358, Percent_Identity=25.9776536312849, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534021, Length=289, Percent_Identity=27.681660899654, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=320, Percent_Identity=25.3125, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI22024126, Length=326, Percent_Identity=26.6871165644172, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49175; Mature: 49175

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQVKVIVDFSARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDY
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HTVRHIEKYVYGATGGSKRAARLWLALLGPEKEYLQPYIDGVERLRRKLLKTLPRHVESI
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERLLASLNEEKWWIRVNTLKADP
HHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEECCCH
DRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEALEP
HHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCC
EPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIEVV
CCCCEEEEECCCCCCCHHEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHCCCHHHEEEE
QADSTTLHLRLKPSKVMLDAPCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETALK
ECCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHH
YRAPAVYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAAHGYAVYGDVARKTARFLPSL
HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCHH
HQTQGFFISLLEP
HCCCCCEEEEECC
>Mature Secondary Structure
MERQVKVIVDFSARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDY
CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
HTVRHIEKYVYGATGGSKRAARLWLALLGPEKEYLQPYIDGVERLRRKLLKTLPRHVESI
HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERLLASLNEEKWWIRVNTLKADP
HHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEECCCH
DRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEALEP
HHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCC
EPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIEVV
CCCCEEEEECCCCCCCHHEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHCCCHHHEEEE
QADSTTLHLRLKPSKVMLDAPCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETALK
ECCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHH
YRAPAVYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAAHGYAVYGDVARKTARFLPSL
HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCHH
HQTQGFFISLLEP
HCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]