Definition | Prochlorococcus marinus str. AS9601, complete genome. |
---|---|
Accession | NC_008816 |
Length | 1,669,886 |
Click here to switch to the map view.
The map label for this gene is 123968703
Identifier: 123968703
GI number: 123968703
Start: 983774
End: 985357
Strand: Reverse
Name: 123968703
Synonym: A9601_11701
Alternate gene names: NA
Gene position: 985357-983774 (Counterclockwise)
Preceding gene: 123968706
Following gene: 123968700
Centisome position: 59.01
GC content: 34.28
Gene sequence:
>1584_bases ATGAATGGGCAATACTCCCCAAAAAATGTTTTAGGTCAGTTAGCGATAGTTTTACATGCTCATCTACCTTATGTCAGAAA AAATGAAAAGAATTCCTTAGAAGAGGATTGGTTATTTCAGGCAATTTTGGAATGTTATGTACCACTACTTCAATCAATAG AATCTTCCAAAAAAGAAAATCCTGAAAATACAAAACTTACTATTAGTTTGTCTCCAACTTTATTATCACTTCTAAATAAT AAACAAATTCAAGAAACTTTCCCAAGCTGGATTAAAACAAGGAATGATTTCTTAAACGAACTACCAATAGAAGAAAAAAA TGCCTCTGCATTTTTAATTAAGAATCTCAATGAAAAATACTCATATTGGCAAAATTGTTCTGGAAATTTAATTGAGAAGT TTAGGGTCTTAAATAACTCTGGAAATTTGGATATTCTTACTTGTGCGGCTACTCATGGATATTTGCCGATTCTAAGGGAG AATCCTGAAACTGTTAAAGGCCAAATTAATACTGCAATAAGGAGCCATAAAAATATTTTTGGAACAAAGCCTTTAGGTAT TTGGTTACCTGAATGCGCTTATTATGAGAATTTAGACGAAATACTAATTAATTCCGGAATAAGATATGCAATCTTAGACG GTCATGGGATTCTTAATGCGACACCAAGGCCTAGGTATGGGGTGTACGCCCCAATCTGCTCGAGAAAAGGAGTTGCCTTC TTCGGAAGAGATAGTGAGTCAACATTGCCCGTTTGGTCTGCTAAGGATGGATTCCCGGGAGATAAAGTTTATAGAGAATT TCATAAAGATTTGGGATGGGAATTGCCTATCTCTAAACTCCAAAAGAAAGGTATTTCAACTAAAAGACCTTTGGGTTTGA AGTTTCATAAGATTACAGATGATAAGGTACCCCTAGGGGAAAAGGCGTTTTACTTAGAAAATGAAGCCAAAAAGAAGGCT GCAGAACATGCTGATGATTATCTTCTCGCGAGATCCAAACAATTAGAAAAATTAATATTATCCTCTTCCTTCAAGCCCTT ATTGGTAGCTCCATTTGATGCAGAGTTATTTGGTCATTGGTGGTATGAAGGGCCTTTTTTTATTGAAAATATTTTAAAGA ACTCTAGTAAATATTCAATTAAGCTTACAAATTTAAAAGAATTTTTACTTCAAAAGCCAAAACTTCAGATTTGCGATCCA TCACCATCAAGCTGGGGACAAGGAGGTTACCACAACTACTGGATTAATGATGCAAATGCATGGATTGTCCCAGAGATCAC AAAAGCAGGCTCAACTTTTGTTGATTTATGCTCGAAAAATTTCAATAATGACTTGTCCACAAGACTTTTCAAGCAAGCAG CAAGAGAATTACTTCTCTCTGAGTCTTCTGATTGGAGTTTTATCCTAAGAGCTGGAACTACAACTGAGCTTGCAAAAGAG AGGATAGAAAGACACTTGTTTAGATTCTGGAAAATAGTTGAAATGATTAAAAATCATTCCAATATTAATTTAAAATTTCT TGAAGATATCGAGGAAGAAGATAAAGTTTTTCCAGATATTAATATTGATGATTGGCGAAAATAA
Upstream 100 bases:
>100_bases AATACTTAAATTATTCAAGTATTCTTTTATGATTAAAGCTTCCTTTTATAAAAGGTTATTTTGATTTTTTATAGAATTAA AGGCATAAATTATAAAAAAT
Downstream 100 bases:
>100_bases AAAAATACTAATTTAATTTAAGCATTCCTAGTTTTACCTTTAGAGGTGAATTTATAAACATTTTACTCATCACATAAATA AGTTTTGGAAGAGGAAGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Alpha-Amylase; (1-_4)-Alpha-D-Glucan Branching; Family; Glycogen Branching; Glycosyl Transferase/Glycoside Hydrolase-Like Protein; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MNGQYSPKNVLGQLAIVLHAHLPYVRKNEKNSLEEDWLFQAILECYVPLLQSIESSKKENPENTKLTISLSPTLLSLLNN KQIQETFPSWIKTRNDFLNELPIEEKNASAFLIKNLNEKYSYWQNCSGNLIEKFRVLNNSGNLDILTCAATHGYLPILRE NPETVKGQINTAIRSHKNIFGTKPLGIWLPECAYYENLDEILINSGIRYAILDGHGILNATPRPRYGVYAPICSRKGVAF FGRDSESTLPVWSAKDGFPGDKVYREFHKDLGWELPISKLQKKGISTKRPLGLKFHKITDDKVPLGEKAFYLENEAKKKA AEHADDYLLARSKQLEKLILSSSFKPLLVAPFDAELFGHWWYEGPFFIENILKNSSKYSIKLTNLKEFLLQKPKLQICDP SPSSWGQGGYHNYWINDANAWIVPEITKAGSTFVDLCSKNFNNDLSTRLFKQAARELLLSESSDWSFILRAGTTTELAKE RIERHLFRFWKIVEMIKNHSNINLKFLEDIEEEDKVFPDINIDDWRK
Sequences:
>Translated_527_residues MNGQYSPKNVLGQLAIVLHAHLPYVRKNEKNSLEEDWLFQAILECYVPLLQSIESSKKENPENTKLTISLSPTLLSLLNN KQIQETFPSWIKTRNDFLNELPIEEKNASAFLIKNLNEKYSYWQNCSGNLIEKFRVLNNSGNLDILTCAATHGYLPILRE NPETVKGQINTAIRSHKNIFGTKPLGIWLPECAYYENLDEILINSGIRYAILDGHGILNATPRPRYGVYAPICSRKGVAF FGRDSESTLPVWSAKDGFPGDKVYREFHKDLGWELPISKLQKKGISTKRPLGLKFHKITDDKVPLGEKAFYLENEAKKKA AEHADDYLLARSKQLEKLILSSSFKPLLVAPFDAELFGHWWYEGPFFIENILKNSSKYSIKLTNLKEFLLQKPKLQICDP SPSSWGQGGYHNYWINDANAWIVPEITKAGSTFVDLCSKNFNNDLSTRLFKQAARELLLSESSDWSFILRAGTTTELAKE RIERHLFRFWKIVEMIKNHSNINLKFLEDIEEEDKVFPDINIDDWRK >Mature_527_residues MNGQYSPKNVLGQLAIVLHAHLPYVRKNEKNSLEEDWLFQAILECYVPLLQSIESSKKENPENTKLTISLSPTLLSLLNN KQIQETFPSWIKTRNDFLNELPIEEKNASAFLIKNLNEKYSYWQNCSGNLIEKFRVLNNSGNLDILTCAATHGYLPILRE NPETVKGQINTAIRSHKNIFGTKPLGIWLPECAYYENLDEILINSGIRYAILDGHGILNATPRPRYGVYAPICSRKGVAF FGRDSESTLPVWSAKDGFPGDKVYREFHKDLGWELPISKLQKKGISTKRPLGLKFHKITDDKVPLGEKAFYLENEAKKKA AEHADDYLLARSKQLEKLILSSSFKPLLVAPFDAELFGHWWYEGPFFIENILKNSSKYSIKLTNLKEFLLQKPKLQICDP SPSSWGQGGYHNYWINDANAWIVPEITKAGSTFVDLCSKNFNNDLSTRLFKQAARELLLSESSDWSFILRAGTTTELAKE RIERHLFRFWKIVEMIKNHSNINLKFLEDIEEEDKVFPDINIDDWRK
Specific function: Unknown
COG id: COG1543
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60579; Mature: 60579
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGQYSPKNVLGQLAIVLHAHLPYVRKNEKNSLEEDWLFQAILECYVPLLQSIESSKKEN CCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PENTKLTISLSPTLLSLLNNKQIQETFPSWIKTRNDFLNELPIEEKNASAFLIKNLNEKY CCCCEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHH SYWQNCSGNLIEKFRVLNNSGNLDILTCAATHGYLPILRENPETVKGQINTAIRSHKNIF HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHCC GTKPLGIWLPECAYYENLDEILINSGIRYAILDGHGILNATPRPRYGVYAPICSRKGVAF CCCCCCEECCCHHHHCCHHHHHHCCCCEEEEEECCCEECCCCCCCCCEECCCCCCCCCEE FGRDSESTLPVWSAKDGFPGDKVYREFHKDLGWELPISKLQKKGISTKRPLGLKFHKITD EECCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEECC DKVPLGEKAFYLENEAKKKAAEHADDYLLARSKQLEKLILSSSFKPLLVAPFDAELFGHW CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH WYEGPFFIENILKNSSKYSIKLTNLKEFLLQKPKLQICDPSPSSWGQGGYHNYWINDANA CCCCHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCE WIVPEITKAGSTFVDLCSKNFNNDLSTRLFKQAARELLLSESSDWSFILRAGTTTELAKE EEECCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH RIERHLFRFWKIVEMIKNHSNINLKFLEDIEEEDKVFPDINIDDWRK HHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCHHHCCCCCCCCCCCCC >Mature Secondary Structure MNGQYSPKNVLGQLAIVLHAHLPYVRKNEKNSLEEDWLFQAILECYVPLLQSIESSKKEN CCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PENTKLTISLSPTLLSLLNNKQIQETFPSWIKTRNDFLNELPIEEKNASAFLIKNLNEKY CCCCEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHH SYWQNCSGNLIEKFRVLNNSGNLDILTCAATHGYLPILRENPETVKGQINTAIRSHKNIF HHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHCC GTKPLGIWLPECAYYENLDEILINSGIRYAILDGHGILNATPRPRYGVYAPICSRKGVAF CCCCCCEECCCHHHHCCHHHHHHCCCCEEEEEECCCEECCCCCCCCCEECCCCCCCCCEE FGRDSESTLPVWSAKDGFPGDKVYREFHKDLGWELPISKLQKKGISTKRPLGLKFHKITD EECCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEECC DKVPLGEKAFYLENEAKKKAAEHADDYLLARSKQLEKLILSSSFKPLLVAPFDAELFGHW CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHH WYEGPFFIENILKNSSKYSIKLTNLKEFLLQKPKLQICDPSPSSWGQGGYHNYWINDANA CCCCHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCE WIVPEITKAGSTFVDLCSKNFNNDLSTRLFKQAARELLLSESSDWSFILRAGTTTELAKE EEECCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH RIERHLFRFWKIVEMIKNHSNINLKFLEDIEEEDKVFPDINIDDWRK HHHHHHHHHHHHHHHHHCCCCCEEEEHHCCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA