Click here to switch to the map view.

The map label for this gene is dppB [H]

Identifier: 121610140

GI number: 121610140

Start: 3567869

End: 3568978

Strand: Direct

Name: dppB [H]

Synonym: Veis_3199

Alternate gene names: 121610140

Gene position: 3567869-3568978 (Clockwise)

Preceding gene: 121610139

Following gene: 121610141

Centisome position: 64.09

GC content: 69.01

Gene sequence:

>1110_bases
ATGAGCGTGGGCGAGGTGGCGATGCAACCGCAAGCCGCTGACCCCTGCGAACGGCTGCCTGCGATCGCAGCGCCGCCCGC
GCACAGCGCGTGGCGCCGCCGGGTGCGCTGGCTGGCCGGGACGCTGTCCACGGTGCTGATCACGCTGGCCGGGCTGCTGC
TGGTCACATTTTTGCTCGGTCGCGTGCTGCCCGCCGACCCGGTGCTGCGCGTCGTCGGCGACCGCGCGCCACAGGATCTG
TACGACCGCGTGTACCGGGAGATGGGCCTTCATCGCCCGTTGGCGCAGCAGTTCGCGCTGTTCATTGGCGACATGGTGCG
CGGCAACTTCGGCAAATCGTCGGTGACGGGCAACCCGATCGGCGAGGACATCCTGCGCTACTTTCCGGCGACCGTCGAAC
TCGCAACGCTGGCCATCGTGCTCGGCGTGCTCGGCGCCATCCCGCTGGGCGTGCTGTGCGCCCGGTATGCCGGGCGGTGG
CCCGACCATCTGGTGCGGGTCGCGTCGCTCGTCGGCCACTCGGTGCCGATTTTCTGGCTCGGCATCGTCGGCCTGCTGGT
GTTCTATGCCCGCCTGGGCTGGGTGGCGGGGCCTGGCCGGCTCGACGTGGCCTACCGCTACGCAGTGCCCGAGGTGACGC
GGCTGATGCTGGTGGACAGCCTGCTTGCCGGCGAGTGGGAGGTCTTTGGCAACGCGCTGTCGCACATCGTGCTGCCGGCC
GCGCTGCTGGGCCTGGTGGCGCTGGGCTATGTGGCGCGCATGACGCGCAGCTTTCTGCTGTGGCAACTGCGCCAGGACTA
CACCACGGTGCTGCGCCTGAAGGGACTGAGCGAATCGGCCATCTTGTGGCGGCATGCGCTGCGCAACGCAGCCGGGCCGA
TTCTCGCGGTGATCGCGCTGACCTACGCCTACCTGCTGGAGGGCGCCGTGCTGACCGAGACCGTTTTCGCCTGGCCGGGG
CTGGGCATGTACATCACCGATTCGCTGTTCGCCGCCGACATCCCGGCGGTGCTGACGGCGACCTTGCTGGTCGGTCTGAT
CTTCATGCTGATCAACATCGCCAGCGAGCTGATCCAGTCGGCGCTCGACCCGAGGACCCGCCGGCCATGA

Upstream 100 bases:

>100_bases
TGATGCAAAAGGACGATCCGGTTGCGATGCGCAAGAACGTGCAGAACTACGGCGGCGGCGTGACCTTCGACTCGACGCAC
TACCACATCATCGAGAAGAA

Downstream 100 bases:

>100_bases
ACCGCCTGACTGACGGCCTGCGCTGGCTCGCCTCGGACATGCCCGCCACGCGCGCGCAGGCGCGTCTGGGCGCGGCCTAT
CGGCTCCTGCGGCGGCTGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSVGEVAMQPQAADPCERLPAIAAPPAHSAWRRRVRWLAGTLSTVLITLAGLLLVTFLLGRVLPADPVLRVVGDRAPQDL
YDRVYREMGLHRPLAQQFALFIGDMVRGNFGKSSVTGNPIGEDILRYFPATVELATLAIVLGVLGAIPLGVLCARYAGRW
PDHLVRVASLVGHSVPIFWLGIVGLLVFYARLGWVAGPGRLDVAYRYAVPEVTRLMLVDSLLAGEWEVFGNALSHIVLPA
ALLGLVALGYVARMTRSFLLWQLRQDYTTVLRLKGLSESAILWRHALRNAAGPILAVIALTYAYLLEGAVLTETVFAWPG
LGMYITDSLFAADIPAVLTATLLVGLIFMLINIASELIQSALDPRTRRP

Sequences:

>Translated_369_residues
MSVGEVAMQPQAADPCERLPAIAAPPAHSAWRRRVRWLAGTLSTVLITLAGLLLVTFLLGRVLPADPVLRVVGDRAPQDL
YDRVYREMGLHRPLAQQFALFIGDMVRGNFGKSSVTGNPIGEDILRYFPATVELATLAIVLGVLGAIPLGVLCARYAGRW
PDHLVRVASLVGHSVPIFWLGIVGLLVFYARLGWVAGPGRLDVAYRYAVPEVTRLMLVDSLLAGEWEVFGNALSHIVLPA
ALLGLVALGYVARMTRSFLLWQLRQDYTTVLRLKGLSESAILWRHALRNAAGPILAVIALTYAYLLEGAVLTETVFAWPG
LGMYITDSLFAADIPAVLTATLLVGLIFMLINIASELIQSALDPRTRRP
>Mature_368_residues
SVGEVAMQPQAADPCERLPAIAAPPAHSAWRRRVRWLAGTLSTVLITLAGLLLVTFLLGRVLPADPVLRVVGDRAPQDLY
DRVYREMGLHRPLAQQFALFIGDMVRGNFGKSSVTGNPIGEDILRYFPATVELATLAIVLGVLGAIPLGVLCARYAGRWP
DHLVRVASLVGHSVPIFWLGIVGLLVFYARLGWVAGPGRLDVAYRYAVPEVTRLMLVDSLLAGEWEVFGNALSHIVLPAA
LLGLVALGYVARMTRSFLLWQLRQDYTTVLRLKGLSESAILWRHALRNAAGPILAVIALTYAYLLEGAVLTETVFAWPGL
GMYITDSLFAADIPAVLTATLLVGLIFMLINIASELIQSALDPRTRRP

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=324, Percent_Identity=41.6666666666667, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1789965, Length=331, Percent_Identity=36.2537764350453, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=31.5625, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=30.8176100628931, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787550, Length=286, Percent_Identity=30.0699300699301, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=24.7678018575851, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=25.7042253521127, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40174; Mature: 40043

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVGEVAMQPQAADPCERLPAIAAPPAHSAWRRRVRWLAGTLSTVLITLAGLLLVTFLLG
CCCCCHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVLPADPVLRVVGDRAPQDLYDRVYREMGLHRPLAQQFALFIGDMVRGNFGKSSVTGNPI
HCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
GEDILRYFPATVELATLAIVLGVLGAIPLGVLCARYAGRWPDHLVRVASLVGHSVPIFWL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
GIVGLLVFYARLGWVAGPGRLDVAYRYAVPEVTRLMLVDSLLAGEWEVFGNALSHIVLPA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLGLVALGYVARMTRSFLLWQLRQDYTTVLRLKGLSESAILWRHALRNAAGPILAVIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
TYAYLLEGAVLTETVFAWPGLGMYITDSLFAADIPAVLTATLLVGLIFMLINIASELIQS
HHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDPRTRRP
HHCCCCCCC
>Mature Secondary Structure 
SVGEVAMQPQAADPCERLPAIAAPPAHSAWRRRVRWLAGTLSTVLITLAGLLLVTFLLG
CCCCHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVLPADPVLRVVGDRAPQDLYDRVYREMGLHRPLAQQFALFIGDMVRGNFGKSSVTGNPI
HCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
GEDILRYFPATVELATLAIVLGVLGAIPLGVLCARYAGRWPDHLVRVASLVGHSVPIFWL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
GIVGLLVFYARLGWVAGPGRLDVAYRYAVPEVTRLMLVDSLLAGEWEVFGNALSHIVLPA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLGLVALGYVARMTRSFLLWQLRQDYTTVLRLKGLSESAILWRHALRNAAGPILAVIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
TYAYLLEGAVLTETVFAWPGLGMYITDSLFAADIPAVLTATLLVGLIFMLINIASELIQS
HHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDPRTRRP
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]