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The map label for this gene is ddpA [H]

Identifier: 121610139

GI number: 121610139

Start: 3566229

End: 3567872

Strand: Direct

Name: ddpA [H]

Synonym: Veis_3198

Alternate gene names: 121610139

Gene position: 3566229-3567872 (Clockwise)

Preceding gene: 121610138

Following gene: 121610140

Centisome position: 64.06

GC content: 67.21

Gene sequence:

>1644_bases
ATGAGACATGCCCTGAAAGCCGTGGCCGTCTCGGCCATGATGTCGGCCATGATGTCGGCCATGGTATCGGCCATGGTATC
GGCCATGGTATCGGCCATGATGTCGCCGGGCGGCGCGCACGCCGCCACGCCGGCGGACACGCTCGTGATCGCGCGCGACA
TCAGCGCTTTCCTCTCGCTCGATCCGCAAGAGGCGTTCGAGATTGCCTCCGGCGACACGCTGAACAACCTCTATCTGCGG
CTGGTGCAGCACGACCCGCGCGATTTCCGGAAGATCATCCCGGGTGCCGCCGAGCGTTGGGAGGCTTCGGCCGACGGCCG
GCAGGTGGTGTTCAAGATCCGGTCCGGGCTGAAGTTCCAGTCCGGCAATCCGCTCACGGCCGAGGACGCAGCGTTCTCGC
TGCGCCGTGGGGTGCTACTGGGCAAGCCGCCGTCGATCATCCTGCGCCAGTTCGGCTGGTCCAAAGACAACGTCGGGCAG
AAGGTGCGCGCCGAAGGCGACAGGCTGATCGTCTCGTTCGACCGGCCCTATGCGCTCGATCTCGTGCTCAGCGCGTTCAG
CGCCGCCATCGCCTCGGTGGTCGATAGCAAACTGGTCATGGCCAACGCGCGCAATGGCGACCTCGGCAACGCCTGGCTGC
GCACCCGCTCGGCGGGCGCCGGCGCCTACAGGCTGCTCGAATGGAAGGCCAAGGATGCCGTGGTGATCGAAGCCTTCCCC
GGCTACGCGGGCGGCGCCGCGCCGCGCATCAGGCGTGTGATCGTGCGGCATGTGGCGGAGGCGGCGGCGCAACGGCTGCT
GCTGGACAAGGGCGATGTCGATGTCGCCGCCGACCTCAACCCCGACCAGGTGCGGGCCATCGCCTCGAACCCGGATCTGA
AGGTGGTGCAGGTGCCGCGCGACACGGTGTTCTACCTGGCGCTGAACCAGGCCAACCCGACCCTCGCCAAGCCCGAGGTC
TGGCAGGCCGCGCGCTGGCTGGTCGACTATGACGGCATCGCCAACCAGCTCTTTCGCGGCCAGTACAAGGTCAACCAAGC
GCCGGTGGCGCAGGGCATGGCCGGCGCCCTGCCGGAGCGGCCGTACAAGCTCGATGTCGCCAAGGCCAAGGCGCTGCTCG
CCAAGGCGGGGCTGGGCGGCGGCTTTACGGTGTCGGTCGACGCGATGGCGGCCACCCCCTACCGCGAGATCGCGCAGTCG
CTGCAATCGACCTTCGGCCAGGCCGGCATCGTGCTCGACCTGCGCGTGGCCGAGCCCTCGCAGGTGCTGACCCGCTACCG
CGAGCGCCGCCACGACATGATCGTGTTCGTCTGGTCGCCGGACTATTCGGACCCGAGCTCGACCATCGAGTTCTTCGCGC
GCAACACCGACAACGGCGCAGGCGTTGCCAACAAGAACGCCGCCTGGCGCAACCACTGGCTGATTCCGCAACTGACCGTC
GAGACCGAGCAGGCTTCGCGCGAGATCGATCCGCCGGCGCGCGTGCAGCGCTACGGCCACTTGCAGCGCGTGCTGCGCGA
CGATTCGCCGTTCGTCTTCATGATGCAAAAGGACGATCCGGTTGCGATGCGCAAGAACGTGCAGAACTACGGCGGCGGCG
TGACCTTCGACTCGACGCACTACCACATCATCGAGAAGAAATGA

Upstream 100 bases:

>100_bases
TGCTCACCAAGCTCGTGACGCAGATGGACTGAAGGCTGAAGGCGCCCCAGCGCGCCGCGTCCGACACCCGTTGCTTCCTC
TGCGTTCCAAAGGAAATCCG

Downstream 100 bases:

>100_bases
GCGTGGGCGAGGTGGCGATGCAACCGCAAGCCGCTGACCCCTGCGAACGGCTGCCTGCGATCGCAGCGCCGCCCGCGCAC
AGCGCGTGGCGCCGCCGGGT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MRHALKAVAVSAMMSAMMSAMVSAMVSAMVSAMMSPGGAHAATPADTLVIARDISAFLSLDPQEAFEIASGDTLNNLYLR
LVQHDPRDFRKIIPGAAERWEASADGRQVVFKIRSGLKFQSGNPLTAEDAAFSLRRGVLLGKPPSIILRQFGWSKDNVGQ
KVRAEGDRLIVSFDRPYALDLVLSAFSAAIASVVDSKLVMANARNGDLGNAWLRTRSAGAGAYRLLEWKAKDAVVIEAFP
GYAGGAAPRIRRVIVRHVAEAAAQRLLLDKGDVDVAADLNPDQVRAIASNPDLKVVQVPRDTVFYLALNQANPTLAKPEV
WQAARWLVDYDGIANQLFRGQYKVNQAPVAQGMAGALPERPYKLDVAKAKALLAKAGLGGGFTVSVDAMAATPYREIAQS
LQSTFGQAGIVLDLRVAEPSQVLTRYRERRHDMIVFVWSPDYSDPSSTIEFFARNTDNGAGVANKNAAWRNHWLIPQLTV
ETEQASREIDPPARVQRYGHLQRVLRDDSPFVFMMQKDDPVAMRKNVQNYGGGVTFDSTHYHIIEKK

Sequences:

>Translated_547_residues
MRHALKAVAVSAMMSAMMSAMVSAMVSAMVSAMMSPGGAHAATPADTLVIARDISAFLSLDPQEAFEIASGDTLNNLYLR
LVQHDPRDFRKIIPGAAERWEASADGRQVVFKIRSGLKFQSGNPLTAEDAAFSLRRGVLLGKPPSIILRQFGWSKDNVGQ
KVRAEGDRLIVSFDRPYALDLVLSAFSAAIASVVDSKLVMANARNGDLGNAWLRTRSAGAGAYRLLEWKAKDAVVIEAFP
GYAGGAAPRIRRVIVRHVAEAAAQRLLLDKGDVDVAADLNPDQVRAIASNPDLKVVQVPRDTVFYLALNQANPTLAKPEV
WQAARWLVDYDGIANQLFRGQYKVNQAPVAQGMAGALPERPYKLDVAKAKALLAKAGLGGGFTVSVDAMAATPYREIAQS
LQSTFGQAGIVLDLRVAEPSQVLTRYRERRHDMIVFVWSPDYSDPSSTIEFFARNTDNGAGVANKNAAWRNHWLIPQLTV
ETEQASREIDPPARVQRYGHLQRVLRDDSPFVFMMQKDDPVAMRKNVQNYGGGVTFDSTHYHIIEKK
>Mature_547_residues
MRHALKAVAVSAMMSAMMSAMVSAMVSAMVSAMMSPGGAHAATPADTLVIARDISAFLSLDPQEAFEIASGDTLNNLYLR
LVQHDPRDFRKIIPGAAERWEASADGRQVVFKIRSGLKFQSGNPLTAEDAAFSLRRGVLLGKPPSIILRQFGWSKDNVGQ
KVRAEGDRLIVSFDRPYALDLVLSAFSAAIASVVDSKLVMANARNGDLGNAWLRTRSAGAGAYRLLEWKAKDAVVIEAFP
GYAGGAAPRIRRVIVRHVAEAAAQRLLLDKGDVDVAADLNPDQVRAIASNPDLKVVQVPRDTVFYLALNQANPTLAKPEV
WQAARWLVDYDGIANQLFRGQYKVNQAPVAQGMAGALPERPYKLDVAKAKALLAKAGLGGGFTVSVDAMAATPYREIAQS
LQSTFGQAGIVLDLRVAEPSQVLTRYRERRHDMIVFVWSPDYSDPSSTIEFFARNTDNGAGVANKNAAWRNHWLIPQLTV
ETEQASREIDPPARVQRYGHLQRVLRDDSPFVFMMQKDDPVAMRKNVQNYGGGVTFDSTHYHIIEKK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=497, Percent_Identity=26.1569416498994, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1789966, Length=551, Percent_Identity=23.7749546279492, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1787052, Length=505, Percent_Identity=21.3861386138614, Blast_Score=86, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59825; Mature: 59825

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHALKAVAVSAMMSAMMSAMVSAMVSAMVSAMMSPGGAHAATPADTLVIARDISAFLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHHHCC
DPQEAFEIASGDTLNNLYLRLVQHDPRDFRKIIPGAAERWEASADGRQVVFKIRSGLKFQ
CHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCCHHEHHHHHCCCEEC
SGNPLTAEDAAFSLRRGVLLGKPPSIILRQFGWSKDNVGQKVRAEGDRLIVSFDRPYALD
CCCCCCHHHHHHHHHCCEECCCCHHHHHHHCCCCCCCCCCHHHCCCCEEEEEECCCHHHH
LVLSAFSAAIASVVDSKLVMANARNGDLGNAWLRTRSAGAGAYRLLEWKAKDAVVIEAFP
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEEEECCCCEEEEEECC
GYAGGAAPRIRRVIVRHVAEAAAQRLLLDKGDVDVAADLNPDQVRAIASNPDLKVVQVPR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHEEEEECCCCEEEEEECC
DTVFYLALNQANPTLAKPEVWQAARWLVDYDGIANQLFRGQYKVNQAPVAQGMAGALPER
CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCC
PYKLDVAKAKALLAKAGLGGGFTVSVDAMAATPYREIAQSLQSTFGQAGIVLDLRVAEPS
CCEEHHHHHHHHHHHCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCHH
QVLTRYRERRHDMIVFVWSPDYSDPSSTIEFFARNTDNGAGVANKNAAWRNHWLIPQLTV
HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHCCCCCCEEEE
ETEQASREIDPPARVQRYGHLQRVLRDDSPFVFMMQKDDPVAMRKNVQNYGGGVTFDSTH
EHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCE
YHIIEKK
EEEEECC
>Mature Secondary Structure
MRHALKAVAVSAMMSAMMSAMVSAMVSAMVSAMMSPGGAHAATPADTLVIARDISAFLSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEHHHHHHHHCC
DPQEAFEIASGDTLNNLYLRLVQHDPRDFRKIIPGAAERWEASADGRQVVFKIRSGLKFQ
CHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCCHHEHHHHHCCCEEC
SGNPLTAEDAAFSLRRGVLLGKPPSIILRQFGWSKDNVGQKVRAEGDRLIVSFDRPYALD
CCCCCCHHHHHHHHHCCEECCCCHHHHHHHCCCCCCCCCCHHHCCCCEEEEEECCCHHHH
LVLSAFSAAIASVVDSKLVMANARNGDLGNAWLRTRSAGAGAYRLLEWKAKDAVVIEAFP
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEEEECCCCEEEEEECC
GYAGGAAPRIRRVIVRHVAEAAAQRLLLDKGDVDVAADLNPDQVRAIASNPDLKVVQVPR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHEEEEECCCCEEEEEECC
DTVFYLALNQANPTLAKPEVWQAARWLVDYDGIANQLFRGQYKVNQAPVAQGMAGALPER
CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCC
PYKLDVAKAKALLAKAGLGGGFTVSVDAMAATPYREIAQSLQSTFGQAGIVLDLRVAEPS
CCEEHHHHHHHHHHHCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCHH
QVLTRYRERRHDMIVFVWSPDYSDPSSTIEFFARNTDNGAGVANKNAAWRNHWLIPQLTV
HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHEECCCCCCCCCCCCCCHHCCCCCCEEEE
ETEQASREIDPPARVQRYGHLQRVLRDDSPFVFMMQKDDPVAMRKNVQNYGGGVTFDSTH
EHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCE
YHIIEKK
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]