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The map label for this gene is ddpC [H]

Identifier: 121610141

GI number: 121610141

Start: 3568975

End: 3569880

Strand: Direct

Name: ddpC [H]

Synonym: Veis_3200

Alternate gene names: 121610141

Gene position: 3568975-3569880 (Clockwise)

Preceding gene: 121610140

Following gene: 121610142

Centisome position: 64.11

GC content: 73.29

Gene sequence:

>906_bases
ATGAACCGCCTGACTGACGGCCTGCGCTGGCTCGCCTCGGACATGCCCGCCACGCGCGCGCAGGCGCGTCTGGGCGCGGC
CTATCGGCTCCTGCGGCGGCTGCCGGGCCAGCCGATCGGCGTTGCCGGCTTGGGGCTCGTGGGCCTCATCACCGCGCTTG
CGCTGGGCGCGCCGCTGCTGCCGCTGGCCGACCCGGCGGCCCAGTCGCTCGGCGACCGGCTGTTGCCGCCTTCGGCAGCG
CACTGGCTGGGCACCGACACGCTGGGGCGCGACATGCTGTCGCGGCTGGTCTTTGGCGCCCGGCCCACGTTGGCCATCGT
GGCACTCGTGCTGCTGGCGAGCGTGCCGGCCGGGGTGCTGATCGGCGCGGCGGCTGGCCTCTGGGGCGGCTGGGTCGAGA
CGGTGCTGATGCGGCTGGCCGACCTGTTCATGGCCTTCCCGCGACTGATCCTCGCGATCGCCGTGGCGGCCACGCTCGGC
ATCGGCCTGTGGAGCGCCGTCATCTCCATCGCGCTGACGGGCTGGCCGCCCTATGCGCGCGTGGCGCGGGCCGAGGTGGC
GATGGTGCGCCAAGCCGAGTTCATCCAGGCGGCACGCGCGCTGGGCGTCTCGCACCTGCGCCTGTGGCTGCGCCACGCAT
TGCCGCTGTGCCTGCCCTCGGCCGTGGTGCGCGCGGCGCTCGACGCGCCGGGCATCGTGCTGATCACTTCGGGCCTTGGC
TTTCTCGGCCTGGGCCTGCCGCCGCCTGCGCCCGAATGGGGCGCCATGGTGGCCGAAGGACGCGCCATCGTTTTTGAAGC
CTGGTGGGTGTCCAGCCTGCCGGGTCTGCTGATTCTGGCGCTGGGCCTGGGCTTGAATTTCCTCGGCGACGCGCTGCGCG
ATGCCGTCGATCCCGGCGTCAAGTGA

Upstream 100 bases:

>100_bases
CGGTGCTGACGGCGACCTTGCTGGTCGGTCTGATCTTCATGCTGATCAACATCGCCAGCGAGCTGATCCAGTCGGCGCTC
GACCCGAGGACCCGCCGGCC

Downstream 100 bases:

>100_bases
GCGCCGCATGGCATGAACACCGCAACCACGGCCACGGCAAGCCAGGCGGGCGAATCACCGCTGCTGGAGATCGACAACCT
GCGCATCGCGTTCGCCACGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNRLTDGLRWLASDMPATRAQARLGAAYRLLRRLPGQPIGVAGLGLVGLITALALGAPLLPLADPAAQSLGDRLLPPSAA
HWLGTDTLGRDMLSRLVFGARPTLAIVALVLLASVPAGVLIGAAAGLWGGWVETVLMRLADLFMAFPRLILAIAVAATLG
IGLWSAVISIALTGWPPYARVARAEVAMVRQAEFIQAARALGVSHLRLWLRHALPLCLPSAVVRAALDAPGIVLITSGLG
FLGLGLPPPAPEWGAMVAEGRAIVFEAWWVSSLPGLLILALGLGLNFLGDALRDAVDPGVK

Sequences:

>Translated_301_residues
MNRLTDGLRWLASDMPATRAQARLGAAYRLLRRLPGQPIGVAGLGLVGLITALALGAPLLPLADPAAQSLGDRLLPPSAA
HWLGTDTLGRDMLSRLVFGARPTLAIVALVLLASVPAGVLIGAAAGLWGGWVETVLMRLADLFMAFPRLILAIAVAATLG
IGLWSAVISIALTGWPPYARVARAEVAMVRQAEFIQAARALGVSHLRLWLRHALPLCLPSAVVRAALDAPGIVLITSGLG
FLGLGLPPPAPEWGAMVAEGRAIVFEAWWVSSLPGLLILALGLGLNFLGDALRDAVDPGVK
>Mature_301_residues
MNRLTDGLRWLASDMPATRAQARLGAAYRLLRRLPGQPIGVAGLGLVGLITALALGAPLLPLADPAAQSLGDRLLPPSAA
HWLGTDTLGRDMLSRLVFGARPTLAIVALVLLASVPAGVLIGAAAGLWGGWVETVLMRLADLFMAFPRLILAIAVAATLG
IGLWSAVISIALTGWPPYARVARAEVAMVRQAEFIQAARALGVSHLRLWLRHALPLCLPSAVVRAALDAPGIVLITSGLG
FLGLGLPPPAPEWGAMVAEGRAIVFEAWWVSSLPGLLILALGLGLNFLGDALRDAVDPGVK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=290, Percent_Identity=38.9655172413793, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787054, Length=275, Percent_Identity=37.4545454545455, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789889, Length=235, Percent_Identity=42.9787234042553, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1789964, Length=244, Percent_Identity=39.344262295082, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787498, Length=270, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787549, Length=240, Percent_Identity=36.6666666666667, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=33.4821428571429, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31343; Mature: 31343

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLTDGLRWLASDMPATRAQARLGAAYRLLRRLPGQPIGVAGLGLVGLITALALGAPLL
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
PLADPAAQSLGDRLLPPSAAHWLGTDTLGRDMLSRLVFGARPTLAIVALVLLASVPAGVL
CCCCHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH
IGAAAGLWGGWVETVLMRLADLFMAFPRLILAIAVAATLGIGLWSAVISIALTGWPPYAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VARAEVAMVRQAEFIQAARALGVSHLRLWLRHALPLCLPSAVVRAALDAPGIVLITSGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH
FLGLGLPPPAPEWGAMVAEGRAIVFEAWWVSSLPGLLILALGLGLNFLGDALRDAVDPGV
HHCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
K
C
>Mature Secondary Structure
MNRLTDGLRWLASDMPATRAQARLGAAYRLLRRLPGQPIGVAGLGLVGLITALALGAPLL
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC
PLADPAAQSLGDRLLPPSAAHWLGTDTLGRDMLSRLVFGARPTLAIVALVLLASVPAGVL
CCCCHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH
IGAAAGLWGGWVETVLMRLADLFMAFPRLILAIAVAATLGIGLWSAVISIALTGWPPYAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VARAEVAMVRQAEFIQAARALGVSHLRLWLRHALPLCLPSAVVRAALDAPGIVLITSGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH
FLGLGLPPPAPEWGAMVAEGRAIVFEAWWVSSLPGLLILALGLGLNFLGDALRDAVDPGV
HHCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]