| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is pheT [H]
Identifier: 121610038
GI number: 121610038
Start: 3444168
End: 3446633
Strand: Direct
Name: pheT [H]
Synonym: Veis_3094
Alternate gene names: 121610038
Gene position: 3444168-3446633 (Clockwise)
Preceding gene: 121610037
Following gene: 121610039
Centisome position: 61.87
GC content: 67.36
Gene sequence:
>2466_bases ATGCAATTTCCCGAATCCTGGTTGCGCGAGTTCTGTAACCCGCCGCTGACCACGGTCGAACTGGCGCAAACGCTGACCAT GGCCGGCCTGGAGGTGGAAGCACTGCGCCCCGTGGCGCCCCCTTGCACCCGGGTCGTGGTGGGCCACATCAAGGCGGTCG CGCAGCATCCCGAGGCCGACCGCCTGCGCGTGTGCCAGGTGGACGTGGGGCAGGGTGGCGCTCTGCTCAACATCGTCTGC GGTGCGCCCAATGCCCGGGTGGGCATCAAAGTGCCTTGCGCATTGGTCGGCGCAGAACTGCCAGCCGGAGATGACGGCCA GCCTGTCCGCATCGAACTGGGTCAACTGCGCGGCGTGCCCAGCCAGGGCATGCTGTGCTCGGCCCGCGAACTCAGGCTGT CCGAGGAGCATGGCGGCGGTTTGCTGGAACTGGACGCATCGGCCCCCCTGGGCCAGGACATCCGCGTGCACCTGGATCTC GACGACATGCTGTTCACCCTCAAGCTCACGCCCAATCTGGCGCATTGCCTGAGCGTCCATGGCATTGCGCGCGAAGTCTC GGCACTGACGGGCGCTGCGCTGCAGCAGCCATCGTTTCCCGCAGTCGCCGCCAGGATTGCCGACAAACTGCCGGTGCAGG TCAGTGCCACTGACCTGTGCGGGCGCTTTTCCGGCCGCATCGTGCGCCATCTGAACCCGCATGCCACCACGCCGCAGTGG ATGCGCGAGCGCCTGGCCCGCTGCGGCCAGCGCAGCGTAGCGCCACTGGTGGACATCTCCAACTACGTGATGTTCGAGCT CGGCCGGCCATCGCATATTTTTGACCTCGACAAGATCTGCGGCGGGCTCCATGTGCGCTGGAGCAAACCTGGCGAGCAGC TCACATTGCTCGATGGCAACCGCATCACGCTCGACGACAAGGTGGGCGTGATTGCCGACGACGAGCAGGTCGAATCGCTG GCCGGCATCATGGGCGGCAACGCCACGGCCGTGTCGGAGCAGACCCGGCATATCTACATCGAGGCCGCCTTCTGGTGGCC CAAGGCGGTGGCAGGGCGCTCGCGGCGCCTGAACTGCGCAACCGATGCCGGCCACCGCTTCGAGCGCGGCGTCGACCCGA GCCTGACCGTAGAGCATATCGAACGCATCACCGCGCTGGTCAGCGCCATCTGCGGCACGCCGCAGACAGCCTGCGGCCCC ATCGACGACCAGTGCCTGAACCTGCCTGTGCCGCAGCCTGTCACGCTGCGCGTGGCGCGTGCGGCCAAGGTCATCGGCAT GCCGCTGACGCAGCAGCAATGCGCCGACGCACTGCAACGCCTGGCCTTGCCGATGGTGCAGGGCGATGGCCAGCTCACGG TCACGCCACCGGCCCACCGCTTTGACCTCACGATAGAGGAAGACCTGATCGAAGAAGTCGCGCGCATGGTGGGCTACGAC AAACTGCCGGCCACGCCCCCGCTGGCACCCATGGCCCCCCAACTCGCCGCCGAGGCCAGGCGCAGCCCATTCGCCGTGCG CCGCGCGCTGGCCGGCGCTGGTTACCAGGAAACGATCAACTTCAGCTTTGTGCCAGAGCGCTGGGAACTGGAACTGGCGG CCAATCCGCAGCCGATCCGGCTGCTCAACCCGATTGCCAGCCAGATGAGCGTCATGCGCTCTACTTTGTTTGGCTCGTTG CTACAGGTTTTGAGGTTCAATCTGGACCGCAAGGCCGCGCGTGTGCGCGTGTTCGAGTTGGGCCGGGTGTTCCTGCGCGC TGACGACATCAAGAACACCGACACCACGGTGGCGGGCATCCACCAGCCCCTGCGCGTGGCGGGCCTGGCCTATGGCCCGG GCGACATCCTGCAATGGGGACGCAAGGAGCAGGCCATCGACTTCTTCGATGTCAAGGGTGATGTGCAGGCCCTGCTGGCG CCACTGTCTGCCGACTTTGAAGCGGCAAGCCATCCGGCCCTGCACCCTGGCCGCTGTGCGCGCGTGCTGCTGAACGGGCG CGCCATCGGCTTTGTCGGCGAGTTGCATCCGCAGTGGCGCCAATCCTGGGAACTGCCCCAGGCCCCGGTGCTGTTCGAGC TCGAACTCGACGCCGTGCTGCAACGCGAGGTGGCCCGCTTCCGGCCCGTGGCCCGGCATCAGGCCGTCGAGCGCGACCTG GCCGTGGTAGTGGCCGAGCGCGTGACACATGCCGACATCATGGCCGCCGTGCAACGGGCCGCACCCGACACCATGCGCTC GGCCGTGCTGTATGACATCTACCGCCCCAAGGCGCCGCGTGCCGGTGAACATGCCGCTGAACCGGCGCCCGCAACCGGAT TGGCCCCCGGTGAGAAAAGCCTGGCCCTGCGCCTGACCCTGGCCAGCGACGAAGCCACACTCACCGAAACCCGGATCGAT ACCGCCGTGCAGGCCGTGGCCGACCAACTGGCCCGGTGCACAGGCGCCCGGCTGCGTGCCGGATGA
Upstream 100 bases:
>100_bases ATGCTGCGCTACGGCGTCAGCGACCTGCGCCTGTTCTTTGACGGCGACATCCGTTTTCTGTCGCAGTTCCGGTAACGCCG ATCCGTACAAGAGTCTGACC
Downstream 100 bases:
>100_bases CGCCCGATGGGAGTGATGCCATGATCGAATTTGCAGTAGAAAACCTGGAGACACCGGCGCTGACGAAAGCACAGTTGGCC GAACTACTGTTTGATCAGAT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MQFPESWLREFCNPPLTTVELAQTLTMAGLEVEALRPVAPPCTRVVVGHIKAVAQHPEADRLRVCQVDVGQGGALLNIVC GAPNARVGIKVPCALVGAELPAGDDGQPVRIELGQLRGVPSQGMLCSARELRLSEEHGGGLLELDASAPLGQDIRVHLDL DDMLFTLKLTPNLAHCLSVHGIAREVSALTGAALQQPSFPAVAARIADKLPVQVSATDLCGRFSGRIVRHLNPHATTPQW MRERLARCGQRSVAPLVDISNYVMFELGRPSHIFDLDKICGGLHVRWSKPGEQLTLLDGNRITLDDKVGVIADDEQVESL AGIMGGNATAVSEQTRHIYIEAAFWWPKAVAGRSRRLNCATDAGHRFERGVDPSLTVEHIERITALVSAICGTPQTACGP IDDQCLNLPVPQPVTLRVARAAKVIGMPLTQQQCADALQRLALPMVQGDGQLTVTPPAHRFDLTIEEDLIEEVARMVGYD KLPATPPLAPMAPQLAAEARRSPFAVRRALAGAGYQETINFSFVPERWELELAANPQPIRLLNPIASQMSVMRSTLFGSL LQVLRFNLDRKAARVRVFELGRVFLRADDIKNTDTTVAGIHQPLRVAGLAYGPGDILQWGRKEQAIDFFDVKGDVQALLA PLSADFEAASHPALHPGRCARVLLNGRAIGFVGELHPQWRQSWELPQAPVLFELELDAVLQREVARFRPVARHQAVERDL AVVVAERVTHADIMAAVQRAAPDTMRSAVLYDIYRPKAPRAGEHAAEPAPATGLAPGEKSLALRLTLASDEATLTETRID TAVQAVADQLARCTGARLRAG
Sequences:
>Translated_821_residues MQFPESWLREFCNPPLTTVELAQTLTMAGLEVEALRPVAPPCTRVVVGHIKAVAQHPEADRLRVCQVDVGQGGALLNIVC GAPNARVGIKVPCALVGAELPAGDDGQPVRIELGQLRGVPSQGMLCSARELRLSEEHGGGLLELDASAPLGQDIRVHLDL DDMLFTLKLTPNLAHCLSVHGIAREVSALTGAALQQPSFPAVAARIADKLPVQVSATDLCGRFSGRIVRHLNPHATTPQW MRERLARCGQRSVAPLVDISNYVMFELGRPSHIFDLDKICGGLHVRWSKPGEQLTLLDGNRITLDDKVGVIADDEQVESL AGIMGGNATAVSEQTRHIYIEAAFWWPKAVAGRSRRLNCATDAGHRFERGVDPSLTVEHIERITALVSAICGTPQTACGP IDDQCLNLPVPQPVTLRVARAAKVIGMPLTQQQCADALQRLALPMVQGDGQLTVTPPAHRFDLTIEEDLIEEVARMVGYD KLPATPPLAPMAPQLAAEARRSPFAVRRALAGAGYQETINFSFVPERWELELAANPQPIRLLNPIASQMSVMRSTLFGSL LQVLRFNLDRKAARVRVFELGRVFLRADDIKNTDTTVAGIHQPLRVAGLAYGPGDILQWGRKEQAIDFFDVKGDVQALLA PLSADFEAASHPALHPGRCARVLLNGRAIGFVGELHPQWRQSWELPQAPVLFELELDAVLQREVARFRPVARHQAVERDL AVVVAERVTHADIMAAVQRAAPDTMRSAVLYDIYRPKAPRAGEHAAEPAPATGLAPGEKSLALRLTLASDEATLTETRID TAVQAVADQLARCTGARLRAG >Mature_821_residues MQFPESWLREFCNPPLTTVELAQTLTMAGLEVEALRPVAPPCTRVVVGHIKAVAQHPEADRLRVCQVDVGQGGALLNIVC GAPNARVGIKVPCALVGAELPAGDDGQPVRIELGQLRGVPSQGMLCSARELRLSEEHGGGLLELDASAPLGQDIRVHLDL DDMLFTLKLTPNLAHCLSVHGIAREVSALTGAALQQPSFPAVAARIADKLPVQVSATDLCGRFSGRIVRHLNPHATTPQW MRERLARCGQRSVAPLVDISNYVMFELGRPSHIFDLDKICGGLHVRWSKPGEQLTLLDGNRITLDDKVGVIADDEQVESL AGIMGGNATAVSEQTRHIYIEAAFWWPKAVAGRSRRLNCATDAGHRFERGVDPSLTVEHIERITALVSAICGTPQTACGP IDDQCLNLPVPQPVTLRVARAAKVIGMPLTQQQCADALQRLALPMVQGDGQLTVTPPAHRFDLTIEEDLIEEVARMVGYD KLPATPPLAPMAPQLAAEARRSPFAVRRALAGAGYQETINFSFVPERWELELAANPQPIRLLNPIASQMSVMRSTLFGSL LQVLRFNLDRKAARVRVFELGRVFLRADDIKNTDTTVAGIHQPLRVAGLAYGPGDILQWGRKEQAIDFFDVKGDVQALLA PLSADFEAASHPALHPGRCARVLLNGRAIGFVGELHPQWRQSWELPQAPVLFELELDAVLQREVARFRPVARHQAVERDL AVVVAERVTHADIMAAVQRAAPDTMRSAVLYDIYRPKAPRAGEHAAEPAPATGLAPGEKSLALRLTLASDEATLTETRID TAVQAVADQLARCTGARLRAG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=278, Percent_Identity=26.2589928057554, Blast_Score=75, Evalue=3e-13, Organism=Escherichia coli, GI1788006, Length=826, Percent_Identity=40.7990314769976, Blast_Score=576, Evalue=1e-165,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 89020; Mature: 89020
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPESWLREFCNPPLTTVELAQTLTMAGLEVEALRPVAPPCTRVVVGHIKAVAQHPEAD CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCC RLRVCQVDVGQGGALLNIVCGAPNARVGIKVPCALVGAELPAGDDGQPVRIELGQLRGVP CEEEEEEECCCCCCEEEEEECCCCCCEEEECCHHEECCCCCCCCCCCEEEEEECCCCCCC SQGMLCSARELRLSEEHGGGLLELDASAPLGQDIRVHLDLDDMLFTLKLTPNLAHCLSVH CCCCEECHHHHEEECCCCCCEEEECCCCCCCCCCEEEEEHHHEEEEEEECCCHHHHHHHH GIAREVSALTGAALQQPSFPAVAARIADKLPVQVSATDLCGRFSGRIVRHLNPHATTPQW HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHCHHHHHCCCCCCCHHH MRERLARCGQRSVAPLVDISNYVMFELGRPSHIFDLDKICGGLHVRWSKPGEQLTLLDGN HHHHHHHCCCCCCCCHHCCCCEEEEEECCCCCEEEHHHHHCCEEEEECCCCCEEEEECCC RITLDDKVGVIADDEQVESLAGIMGGNATAVSEQTRHIYIEAAFWWPKAVAGRSRRLNCA EEEECCCCCEEECHHHHHHHHHHCCCCCEEECCCCEEEEEEEEEECCHHHCCCCCEEEEC TDAGHRFERGVDPSLTVEHIERITALVSAICGTPQTACGPIDDQCLNLPVPQPVTLRVAR CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHH AAKVIGMPLTQQQCADALQRLALPMVQGDGQLTVTPPAHRFDLTIEEDLIEEVARMVGYD HHHHHCCCCCHHHHHHHHHHHHCCEEECCCEEEECCCCCEEEEEEHHHHHHHHHHHHCCC KLPATPPLAPMAPQLAAEARRSPFAVRRALAGAGYQETINFSFVPERWELELAANPQPIR CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHCCCEEECCCCEEEEECCCCCCHH LLNPIASQMSVMRSTLFGSLLQVLRFNLDRKAARVRVFELGRVFLRADDIKNTDTTVAGI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHEEECCCCCCCCHHHHH HQPLRVAGLAYGPGDILQWGRKEQAIDFFDVKGDVQALLAPLSADFEAASHPALHPGRCA CCCHHHHEEECCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHH RVLLNGRAIGFVGELHPQWRQSWELPQAPVLFELELDAVLQREVARFRPVARHQAVERDL HHEECCCEEEEECCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCHHHHHHHHHHHH AVVVAERVTHADIMAAVQRAAPDTMRSAVLYDIYRPKAPRAGEHAAEPAPATGLAPGEKS HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC LALRLTLASDEATLTETRIDTAVQAVADQLARCTGARLRAG EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MQFPESWLREFCNPPLTTVELAQTLTMAGLEVEALRPVAPPCTRVVVGHIKAVAQHPEAD CCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCC RLRVCQVDVGQGGALLNIVCGAPNARVGIKVPCALVGAELPAGDDGQPVRIELGQLRGVP CEEEEEEECCCCCCEEEEEECCCCCCEEEECCHHEECCCCCCCCCCCEEEEEECCCCCCC SQGMLCSARELRLSEEHGGGLLELDASAPLGQDIRVHLDLDDMLFTLKLTPNLAHCLSVH CCCCEECHHHHEEECCCCCCEEEECCCCCCCCCCEEEEEHHHEEEEEEECCCHHHHHHHH GIAREVSALTGAALQQPSFPAVAARIADKLPVQVSATDLCGRFSGRIVRHLNPHATTPQW HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHCHHHHHCCCCCCCHHH MRERLARCGQRSVAPLVDISNYVMFELGRPSHIFDLDKICGGLHVRWSKPGEQLTLLDGN HHHHHHHCCCCCCCCHHCCCCEEEEEECCCCCEEEHHHHHCCEEEEECCCCCEEEEECCC RITLDDKVGVIADDEQVESLAGIMGGNATAVSEQTRHIYIEAAFWWPKAVAGRSRRLNCA EEEECCCCCEEECHHHHHHHHHHCCCCCEEECCCCEEEEEEEEEECCHHHCCCCCEEEEC TDAGHRFERGVDPSLTVEHIERITALVSAICGTPQTACGPIDDQCLNLPVPQPVTLRVAR CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHH AAKVIGMPLTQQQCADALQRLALPMVQGDGQLTVTPPAHRFDLTIEEDLIEEVARMVGYD HHHHHCCCCCHHHHHHHHHHHHCCEEECCCEEEECCCCCEEEEEEHHHHHHHHHHHHCCC KLPATPPLAPMAPQLAAEARRSPFAVRRALAGAGYQETINFSFVPERWELELAANPQPIR CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHCCCEEECCCCEEEEECCCCCCHH LLNPIASQMSVMRSTLFGSLLQVLRFNLDRKAARVRVFELGRVFLRADDIKNTDTTVAGI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHEEECCCCCCCCHHHHH HQPLRVAGLAYGPGDILQWGRKEQAIDFFDVKGDVQALLAPLSADFEAASHPALHPGRCA CCCHHHHEEECCCHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHH RVLLNGRAIGFVGELHPQWRQSWELPQAPVLFELELDAVLQREVARFRPVARHQAVERDL HHEECCCEEEEECCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHCHHHHHHHHHHHH AVVVAERVTHADIMAAVQRAAPDTMRSAVLYDIYRPKAPRAGEHAAEPAPATGLAPGEKS HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC LALRLTLASDEATLTETRIDTAVQAVADQLARCTGARLRAG EEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]