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The map label for this gene is ihfA [H]

Identifier: 121610039

GI number: 121610039

Start: 3446654

End: 3446980

Strand: Direct

Name: ihfA [H]

Synonym: Veis_3095

Alternate gene names: 121610039

Gene position: 3446654-3446980 (Clockwise)

Preceding gene: 121610038

Following gene: 121610040

Centisome position: 61.92

GC content: 55.66

Gene sequence:

>327_bases
ATGATCGAATTTGCAGTAGAAAACCTGGAGACACCGGCGCTGACGAAAGCACAGTTGGCCGAACTACTGTTTGATCAGAT
CGGCCTGAACAAGCGCGAGTCCAAAGACATGATCGACGCGGTTTTCGATCTGATTGCGCAAAGTCTGGTCGACGGCAAAG
ACGTCAAGTTATCGGGCTTCGGCAATTTTCAGATCCGCACCAAAGCGCCCAGACCCGGGCGCAACCCGCGCACGGGCGAA
GCCATCCCCATCCAGGCACGCCGCGTCGTGATCTTTCATGCCAGCAGCAAGCTCAAGGAACAGATACAGACAGCCGCGAT
CGGATAA

Upstream 100 bases:

>100_bases
AAACCCGGATCGATACCGCCGTGCAGGCCGTGGCCGACCAACTGGCCCGGTGCACAGGCGCCCGGCTGCGTGCCGGATGA
CGCCCGATGGGAGTGATGCC

Downstream 100 bases:

>100_bases
ATTGGAGACCGCCTTTGTCGCAATCTGGACACCAACTGGCTGGCGGTACCGGCGTGTCTGCGGTAGGCTTGCCAGCTTTC
TGGTCTGAACCCGCAATCCA

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MIEFAVENLETPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAPRPGRNPRTGE
AIPIQARRVVIFHASSKLKEQIQTAAIG

Sequences:

>Translated_108_residues
MIEFAVENLETPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAPRPGRNPRTGE
AIPIQARRVVIFHASSKLKEQIQTAAIG
>Mature_108_residues
MIEFAVENLETPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAPRPGRNPRTGE
AIPIQARRVVIFHASSKLKEQIQTAAIG

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=54.2553191489362, Blast_Score=113, Evalue=2e-27,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=35.5555555555556, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=34.4444444444444, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11904; Mature: 11904

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFAVENLETPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GNFQIRTKAPRPGRNPRTGEAIPIQARRVVIFHASSKLKEQIQTAAIG
CCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure
MIEFAVENLETPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGF
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
GNFQIRTKAPRPGRNPRTGEAIPIQARRVVIFHASSKLKEQIQTAAIG
CCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA