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The map label for this gene is ybgF [C]

Identifier: 120612057

GI number: 120612057

Start: 3760503

End: 3761309

Strand: Reverse

Name: ybgF [C]

Synonym: Aave_3404

Alternate gene names: 120612057

Gene position: 3761309-3760503 (Counterclockwise)

Preceding gene: 120612058

Following gene: 120612056

Centisome position: 70.27

GC content: 69.39

Gene sequence:

>807_bases
ATGGCGAACCCCACCGTGCAGCAGCGGACGCGTGAGCGCGTCCGCAAGGCGGCGGCGCTCGCCGCGCTGTCGCTGGCGGC
CGGCTTCGGTGCCACGGCCAGCCATGCCGCGCTCTTCGAGGACGAAGAGGCCCGCCGCGCCATCCTCGAATTGCGCCAGC
GCGTCGATGCGCTCCAGCAGCAATTGGGCGGCGACCAGCGCCGCAGCTCGGACGAGACGTCCCAGATGCGCCGCAGCCTC
ATCGACCTGCAATCGCAGATCGAAACCCTGCGTTCGGAGCAGGCCAGCCTGCGCGGCCAGAACGAGCAGCTGCAGCGCGA
CGTGGCCGACCTGCAGCGCCGGCAGAAGGACATCGCCCAGGGCGTGGACGAACGCCTCAAGCAGTTCGAGCCGGCCAAGG
TGACCATGGACGGCCAGGAATTCCAGGCCGACCCCGCGGAAAAGCGCGACTTCGAAGCCGCGCTGGCCGTGTTCCGTTCG
GGCAAATTCCCCGATGCCGTGTCCGCCTTCGGCAACTTCCTGCGCCAGTATCCCCGCAGCGGCTACGTGCCCTCGGCCCG
GTTCTGGCTGGGCAACGCCCAGTACGCCACGCGCGACTACAAGGAAGCGATCAACAACTTCAAGGCCCTGCTGGCCGCGT
CGCCCGACCATGCGCGCGCGCCGGAAGCGGCCCTGTCGATCGCCAACTGCCAGATCGAGCTGAAGGACACGCGCGCCGCG
CGCAAGACGCTGGAAGACCTGCTGCGAGCCTATCCGCAGTCCGAAGCCGCTGCCGCGGCCAAGGAACGCCTCGCGCGGCT
GAAGTGA

Upstream 100 bases:

>100_bases
AGATGGAAGCCGTGAGCTTCGGCAAGGAAAAGCCCGCGGTGCAAGGCAACACGGAAGACGCCTTCTCGCAGAACCGCCGC
GTTGAACTGTCCTACCGTTG

Downstream 100 bases:

>100_bases
GCACGCCGGGGCAGCAGCATCCGCAGGGGGTGGCGCCGGAGACGGCGCAGCCCTCCGCCCATCCTCCCTCGGGCTCCGGC
CCGGGGGCGCAAGATCCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MANPTVQQRTRERVRKAAALAALSLAAGFGATASHAALFEDEEARRAILELRQRVDALQQQLGGDQRRSSDETSQMRRSL
IDLQSQIETLRSEQASLRGQNEQLQRDVADLQRRQKDIAQGVDERLKQFEPAKVTMDGQEFQADPAEKRDFEAALAVFRS
GKFPDAVSAFGNFLRQYPRSGYVPSARFWLGNAQYATRDYKEAINNFKALLAASPDHARAPEAALSIANCQIELKDTRAA
RKTLEDLLRAYPQSEAAAAAKERLARLK

Sequences:

>Translated_268_residues
MANPTVQQRTRERVRKAAALAALSLAAGFGATASHAALFEDEEARRAILELRQRVDALQQQLGGDQRRSSDETSQMRRSL
IDLQSQIETLRSEQASLRGQNEQLQRDVADLQRRQKDIAQGVDERLKQFEPAKVTMDGQEFQADPAEKRDFEAALAVFRS
GKFPDAVSAFGNFLRQYPRSGYVPSARFWLGNAQYATRDYKEAINNFKALLAASPDHARAPEAALSIANCQIELKDTRAA
RKTLEDLLRAYPQSEAAAAAKERLARLK
>Mature_267_residues
ANPTVQQRTRERVRKAAALAALSLAAGFGATASHAALFEDEEARRAILELRQRVDALQQQLGGDQRRSSDETSQMRRSLI
DLQSQIETLRSEQASLRGQNEQLQRDVADLQRRQKDIAQGVDERLKQFEPAKVTMDGQEFQADPAEKRDFEAALAVFRSG
KFPDAVSAFGNFLRQYPRSGYVPSARFWLGNAQYATRDYKEAINNFKALLAASPDHARAPEAALSIANCQIELKDTRAAR
KTLEDLLRAYPQSEAAAAAKERLARLK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=116, Percent_Identity=29.3103448275862, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29932; Mature: 29801

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPTVQQRTRERVRKAAALAALSLAAGFGATASHAALFEDEEARRAILELRQRVDALQQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QLGGDQRRSSDETSQMRRSLIDLQSQIETLRSEQASLRGQNEQLQRDVADLQRRQKDIAQ
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVDERLKQFEPAKVTMDGQEFQADPAEKRDFEAALAVFRSGKFPDAVSAFGNFLRQYPRS
HHHHHHHHCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
GYVPSARFWLGNAQYATRDYKEAINNFKALLAASPDHARAPEAALSIANCQIELKDTRAA
CCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHCEEEHHHHHHH
RKTLEDLLRAYPQSEAAAAAKERLARLK
HHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANPTVQQRTRERVRKAAALAALSLAAGFGATASHAALFEDEEARRAILELRQRVDALQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QLGGDQRRSSDETSQMRRSLIDLQSQIETLRSEQASLRGQNEQLQRDVADLQRRQKDIAQ
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GVDERLKQFEPAKVTMDGQEFQADPAEKRDFEAALAVFRSGKFPDAVSAFGNFLRQYPRS
HHHHHHHHCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
GYVPSARFWLGNAQYATRDYKEAINNFKALLAASPDHARAPEAALSIANCQIELKDTRAA
CCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHCEEEHHHHHHH
RKTLEDLLRAYPQSEAAAAAKERLARLK
HHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]