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The map label for this gene is pal [H]

Identifier: 120612058

GI number: 120612058

Start: 3761309

End: 3761854

Strand: Reverse

Name: pal [H]

Synonym: Aave_3405

Alternate gene names: 120612058

Gene position: 3761854-3761309 (Counterclockwise)

Preceding gene: 120612059

Following gene: 120612057

Centisome position: 70.28

GC content: 66.12

Gene sequence:

>546_bases
ATGATCAACCTTCCCTTCAAACGCATTTCCCTGGCCCTCACCGTGGCCGCTCTCATGGCGGGCTGCAGCTCGGGCGTGAA
GCTGGAGGACGTGCCTGTCGAGAACAAGGGGGCCACCTCCACGGCTCCCGACGGTGCCAATTCCAGCGGAAATTCCCAGA
GCGGCGTCGCTCCCGTGGACCTGAACCAGTCGGCGCGCGACGCTGCCGGCCCGGTCGGCGTGGCCCGCATCGTGTATTTC
GACTTCGACAGCTACGTCGTCAAGCCCGAGTACCAGTCGCTCATCGAGCAGCACGCCCGGTTCATCAAGGCCAGCCAGGG
CCGCAAGGTCATGATCGAAGGCCACACCGACGACCGCGGCGGCCGCGAATACAACCTGGCCCTGGGCCAGAAGCGTGCCG
AGGCCGTGCGCCGCGCGCTGGGCCTTCTGGGCGTGCCCGAGGCCCAGATGGAAGCCGTGAGCTTCGGCAAGGAAAAGCCC
GCGGTGCAAGGCAACACGGAAGACGCCTTCTCGCAGAACCGCCGCGTTGAACTGTCCTACCGTTGA

Upstream 100 bases:

>100_bases
GGGAGCCGGACTGGGGTCCGTTCCAGAAACAATAATTTGAATCTTTTTCGTTTTTCAGACTCGACAGTAACGCTTTATCC
GGACTAGGAGAACCATCCCA

Downstream 100 bases:

>100_bases
TGGCGAACCCCACCGTGCAGCAGCGGACGCGTGAGCGCGTCCGCAAGGCGGCGGCGCTCGCCGCGCTGTCGCTGGCGGCC
GGCTTCGGTGCCACGGCCAG

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MINLPFKRISLALTVAALMAGCSSGVKLEDVPVENKGATSTAPDGANSSGNSQSGVAPVDLNQSARDAAGPVGVARIVYF
DFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDDRGGREYNLALGQKRAEAVRRALGLLGVPEAQMEAVSFGKEKP
AVQGNTEDAFSQNRRVELSYR

Sequences:

>Translated_181_residues
MINLPFKRISLALTVAALMAGCSSGVKLEDVPVENKGATSTAPDGANSSGNSQSGVAPVDLNQSARDAAGPVGVARIVYF
DFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDDRGGREYNLALGQKRAEAVRRALGLLGVPEAQMEAVSFGKEKP
AVQGNTEDAFSQNRRVELSYR
>Mature_181_residues
MINLPFKRISLALTVAALMAGCSSGVKLEDVPVENKGATSTAPDGANSSGNSQSGVAPVDLNQSARDAAGPVGVARIVYF
DFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDDRGGREYNLALGQKRAEAVRRALGLLGVPEAQMEAVSFGKEKP
AVQGNTEDAFSQNRRVELSYR

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=179, Percent_Identity=37.4301675977654, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19412; Mature: 19412

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLPFKRISLALTVAALMAGCSSGVKLEDVPVENKGATSTAPDGANSSGNSQSGVAPVD
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
LNQSARDAAGPVGVARIVYFDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDDRG
CCCCCHHHCCCCCEEEEEEEECCCEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GREYNLALGQKRAEAVRRALGLLGVPEAQMEAVSFGKEKPAVQGNTEDAFSQNRRVELSY
CCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEC
R
C
>Mature Secondary Structure
MINLPFKRISLALTVAALMAGCSSGVKLEDVPVENKGATSTAPDGANSSGNSQSGVAPVD
CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
LNQSARDAAGPVGVARIVYFDFDSYVVKPEYQSLIEQHARFIKASQGRKVMIEGHTDDRG
CCCCCHHHCCCCCEEEEEEEECCCEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
GREYNLALGQKRAEAVRRALGLLGVPEAQMEAVSFGKEKPAVQGNTEDAFSQNRRVELSY
CCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]