Click here to switch to the map view.

The map label for this gene is ygdL [C]

Identifier: 120612056

GI number: 120612056

Start: 3759607

End: 3760506

Strand: Reverse

Name: ygdL [C]

Synonym: Aave_3403

Alternate gene names: 120612056

Gene position: 3760506-3759607 (Counterclockwise)

Preceding gene: 120612057

Following gene: 120612051

Centisome position: 70.25

GC content: 71.89

Gene sequence:

>900_bases
GTGAGCACGCCGGGGCAGCAGCATCCGCAGGGGGTGGCGCCGGAGACGGCGCAGCCCTCCGCCCATCCTCCCTCGGGCTC
CGGCCCGGGGGCGCAAGATCCCTTCCTCCTCGACGCCGACCTGCGCCGCCGCTTCGGTGGGCTGGAGCGCCTCTACGGCG
TGGAGGGGGCCGCCCGCATCCGCGCGGCCCACGTCGCCGTGGTCGGCGTGGGCGGTGTCGGCTCCTGGGCCGTCGAGGCC
CTGGCCCGCAGCGGGGTGGGGCGGCTCACGCTCATCGACCTCGACAACGTGGCGGAATCCAACGTGAACCGCCAGATCCA
CGCCCTGTCCACCACCGTGGGACAGGCCAAGGTCGAGGCCATGCGCGACCGCATCGCGCTGATCCACCCGGGCTGCCAGG
TGCACTGCATCGAGGAATTCGTCGATCCCGGCAACTGGCCCGCCATCCTGCCCGAGGGCGTGGACGCGGTCATCGACGCC
TGCGACCAGGTCCACGCCAAGACCGCCATGGCGGCCTGGGCGCTGAAGCTGCGGCATGGCCACCACCGCTTCATCAGCGT
GGGGGCGGCCGGCGGCAAGCGCCTGGCCCACAAGGTGGACATCGACGATCTTTCGCAGACCACGCACGACCCCTTGCTCG
CGCAGCTGCGCTACCGCCTGCGCAAGCAGCACGGCGCCGCGCGCGAAGGGCGCCGCATCGGCATCACCTGTGTTTTCAGC
CGCGAAGCCGTGGCACCTCCGCATGCCTCGTGCGCGCTGGATGCCGGCGCGGACGGCACCCTGAACTGCCACGGCTACGG
CTCGGTGGTGTCGGTCACCGCCACCTTCGGCCAGTGCGCCGCCGGCTGGGTGCTCGATCGGCTCGCGGAATCTGGTTCGG
GCCCTAAAGTAGCGCTATAA

Upstream 100 bases:

>100_bases
AGGACACGCGCGCCGCGCGCAAGACGCTGGAAGACCTGCTGCGAGCCTATCCGCAGTCCGAAGCCGCTGCCGCGGCCAAG
GAACGCCTCGCGCGGCTGAA

Downstream 100 bases:

>100_bases
TTTGAGTCTTTGCTGTTGCGGCCTCCGGGCCGTGGCAGCAATGTTGGGACGTTAGCTCAGTTGGTAGAGCAGCGGACTTT
TAATCCGTTGGTCACAAGTT

Product: UBA/THIF-type NAD/FAD-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSTPGQQHPQGVAPETAQPSAHPPSGSGPGAQDPFLLDADLRRRFGGLERLYGVEGAARIRAAHVAVVGVGGVGSWAVEA
LARSGVGRLTLIDLDNVAESNVNRQIHALSTTVGQAKVEAMRDRIALIHPGCQVHCIEEFVDPGNWPAILPEGVDAVIDA
CDQVHAKTAMAAWALKLRHGHHRFISVGAAGGKRLAHKVDIDDLSQTTHDPLLAQLRYRLRKQHGAAREGRRIGITCVFS
REAVAPPHASCALDAGADGTLNCHGYGSVVSVTATFGQCAAGWVLDRLAESGSGPKVAL

Sequences:

>Translated_299_residues
MSTPGQQHPQGVAPETAQPSAHPPSGSGPGAQDPFLLDADLRRRFGGLERLYGVEGAARIRAAHVAVVGVGGVGSWAVEA
LARSGVGRLTLIDLDNVAESNVNRQIHALSTTVGQAKVEAMRDRIALIHPGCQVHCIEEFVDPGNWPAILPEGVDAVIDA
CDQVHAKTAMAAWALKLRHGHHRFISVGAAGGKRLAHKVDIDDLSQTTHDPLLAQLRYRLRKQHGAAREGRRIGITCVFS
REAVAPPHASCALDAGADGTLNCHGYGSVVSVTATFGQCAAGWVLDRLAESGSGPKVAL
>Mature_298_residues
STPGQQHPQGVAPETAQPSAHPPSGSGPGAQDPFLLDADLRRRFGGLERLYGVEGAARIRAAHVAVVGVGGVGSWAVEAL
ARSGVGRLTLIDLDNVAESNVNRQIHALSTTVGQAKVEAMRDRIALIHPGCQVHCIEEFVDPGNWPAILPEGVDAVIDAC
DQVHAKTAMAAWALKLRHGHHRFISVGAAGGKRLAHKVDIDDLSQTTHDPLLAQLRYRLRKQHGAAREGRRIGITCVFSR
EAVAPPHASCALDAGADGTLNCHGYGSVVSVTATFGQCAAGWVLDRLAESGSGPKVAL

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=254, Percent_Identity=42.9133858267717, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787048, Length=123, Percent_Identity=35.7723577235772, Blast_Score=78, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6321790, Length=278, Percent_Identity=26.2589928057554, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6322825, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24582879, Length=126, Percent_Identity=32.5396825396825, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 31404; Mature: 31273

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPGQQHPQGVAPETAQPSAHPPSGSGPGAQDPFLLDADLRRRFGGLERLYGVEGAARI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCHHHHHCCCCHHHH
RAAHVAVVGVGGVGSWAVEALARSGVGRLTLIDLDNVAESNVNRQIHALSTTVGQAKVEA
EEEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHH
MRDRIALIHPGCQVHCIEEFVDPGNWPAILPEGVDAVIDACDQVHAKTAMAAWALKLRHG
HHHCEEEECCCCEEEEHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HHRFISVGAAGGKRLAHKVDIDDLSQTTHDPLLAQLRYRLRKQHGAAREGRRIGITCVFS
CEEEEEEECCCCCHHEEECCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
REAVAPPHASCALDAGADGTLNCHGYGSVVSVTATFGQCAAGWVLDRLAESGSGPKVAL
CCCCCCCCCCEEEECCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STPGQQHPQGVAPETAQPSAHPPSGSGPGAQDPFLLDADLRRRFGGLERLYGVEGAARI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCHHHHHCCCCHHHH
RAAHVAVVGVGGVGSWAVEALARSGVGRLTLIDLDNVAESNVNRQIHALSTTVGQAKVEA
EEEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHH
MRDRIALIHPGCQVHCIEEFVDPGNWPAILPEGVDAVIDACDQVHAKTAMAAWALKLRHG
HHHCEEEECCCCEEEEHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HHRFISVGAAGGKRLAHKVDIDDLSQTTHDPLLAQLRYRLRKQHGAAREGRRIGITCVFS
CEEEEEEECCCCCHHEEECCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
REAVAPPHASCALDAGADGTLNCHGYGSVVSVTATFGQCAAGWVLDRLAESGSGPKVAL
CCCCCCCCCCEEEECCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]