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The map label for this gene is intZ [H]

Identifier: 120612020

GI number: 120612020

Start: 3721507

End: 3722691

Strand: Reverse

Name: intZ [H]

Synonym: Aave_3366

Alternate gene names: 120612020

Gene position: 3722691-3721507 (Counterclockwise)

Preceding gene: 120612021

Following gene: 120612019

Centisome position: 69.55

GC content: 63.88

Gene sequence:

>1185_bases
ATGTACGTGACGGTATCGCCCGCCGGTACCGTCACCTTCCGCTACGATTACCGTCTCAACGGGCGCCGTGAGACCCTGAC
CATTGGTCGCTATGGCGCTGGCGGGATATCCCTGGCTCTGGCCCGCGAAAAGCTGCTCGACGCAAAGAAGGCTGTCGCTG
CGGGCCGTTCCCCCGCCCTGGAGAAGCAGCGCGAAAAGCGCCGGCTGACTGCAGCCAAGAACTTCGGTGATGTAGCGCTC
AAGTGGCTGGCGGACGCCAAGATGGCCGACAGCACGCGCGCGATGCGCAAGCATGTCGTAGACCGCGACATCCTGCCGGT
GTTCAAGAGCCGTCTGCTCAACGAAGTCACCGCCGACGACCTGCGGGCCTTGTGCAACAAGGTGAAGGCGCGCGGGGCTC
CTGCCACTGCAGTGCATGTCCGCGACATCGTGAAGCAGGTCTATGCCTTTGCCATCCTGCATGGGGAGAGGGTGGACAAC
CCGGCCAACGACGTGGCGGCCGCCTTGATCGCCACCTTCGTGCCGAAAGACCGGGCGCTGTCGCCGACCGAGATCCGCTT
GGCGTTCCAACAGTTGGAGTCCATTGCGACATACCCGACGATCCGCTTGGCACTGCGCATGGTCCTGCTGACCTTGGTGC
GCAAGAGCGAACTGATCGAGGCCACCTGGAGCGAGATCGACTTCGAGAACGCGACCTGGACGATTCCGAAGCAGCGGATG
AAGGGGCGCAATCCACATGTGGTCTATCTGTCACGGCAGGCCATGGACATCCTGGTGGCGTTGCACACCTGCGCGGCGGG
CTCGAAGTTCGTGTTGCCCTCGCGCTACGAGCCGACCCGTTGCATGTCGCATGCGACCTTGAACCGCGTGACCCAGCTCA
TCGTGTCGCGAGCCCAGGCTGCAGGCCTGCCGTTGGGGCCTTTCACGGTGCATGACCTTCGCCGCACGGGCTCGACGCTG
CTCAACGAAGTGGGCTTCAACGGCGACTGGATCGAGAAGTGCCTGGCACACGAGGAAGGGCGCTCCTCGCGCTCGATCTA
CAACAAGGCCGAGTACGCTGAGCAGCGGCGGCACATGCTGCAGGAGTGGGCGGACATGGTCGATGCCTGGATCGACGGGC
GCACCCATGTGCCGAAGCTGCTGCCGGAGAACACATCGGTCCCGGTTCTCAGCGCGGCTTTGTGA

Upstream 100 bases:

>100_bases
GACGGTAAAAGCCGTCACGAAACAGGAGGAAAACCTCGACACAGCACTGCGCAACCTGAAGCCTAAGTCCTTGACTTATA
AGGCTTCTGATCGGGATGGG

Downstream 100 bases:

>100_bases
AGGGAGGGCCGCATGATGACCGTATCGAGACTCCTGTCGGCGACGAGTGCAAGGTTTGCTGGCATGGCGAAAAGATCACT
CTGAGTGATTCTTTGTGGCC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGAGGISLALAREKLLDAKKAVAAGRSPALEKQREKRRLTAAKNFGDVAL
KWLADAKMADSTRAMRKHVVDRDILPVFKSRLLNEVTADDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDN
PANDVAAALIATFVPKDRALSPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRM
KGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVSRAQAAGLPLGPFTVHDLRRTGSTL
LNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHMLQEWADMVDAWIDGRTHVPKLLPENTSVPVLSAAL

Sequences:

>Translated_394_residues
MYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGAGGISLALAREKLLDAKKAVAAGRSPALEKQREKRRLTAAKNFGDVAL
KWLADAKMADSTRAMRKHVVDRDILPVFKSRLLNEVTADDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDN
PANDVAAALIATFVPKDRALSPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRM
KGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVSRAQAAGLPLGPFTVHDLRRTGSTL
LNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHMLQEWADMVDAWIDGRTHVPKLLPENTSVPVLSAAL
>Mature_394_residues
MYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGAGGISLALAREKLLDAKKAVAAGRSPALEKQREKRRLTAAKNFGDVAL
KWLADAKMADSTRAMRKHVVDRDILPVFKSRLLNEVTADDLRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDN
PANDVAAALIATFVPKDRALSPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRM
KGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVSRAQAAGLPLGPFTVHDLRRTGSTL
LNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHMLQEWADMVDAWIDGRTHVPKLLPENTSVPVLSAAL

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=378, Percent_Identity=32.8042328042328, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788974, Length=376, Percent_Identity=31.1170212765957, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788690, Length=372, Percent_Identity=28.7634408602151, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43974; Mature: 43974

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGAGGISLALAREKLLDAKKAVAAGRSPAL
CEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
EKQREKRRLTAAKNFGDVALKWLADAKMADSTRAMRKHVVDRDILPVFKSRLLNEVTADD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDNPANDVAAALIATFVPKDRAL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
SPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRM
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
KGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVSRAQA
CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AGLPLGPFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHML
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QEWADMVDAWIDGRTHVPKLLPENTSVPVLSAAL
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHCCC
>Mature Secondary Structure
MYVTVSPAGTVTFRYDYRLNGRRETLTIGRYGAGGISLALAREKLLDAKKAVAAGRSPAL
CEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
EKQREKRRLTAAKNFGDVALKWLADAKMADSTRAMRKHVVDRDILPVFKSRLLNEVTADD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LRALCNKVKARGAPATAVHVRDIVKQVYAFAILHGERVDNPANDVAAALIATFVPKDRAL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
SPTEIRLAFQQLESIATYPTIRLALRMVLLTLVRKSELIEATWSEIDFENATWTIPKQRM
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
KGRNPHVVYLSRQAMDILVALHTCAAGSKFVLPSRYEPTRCMSHATLNRVTQLIVSRAQA
CCCCCCEEEEEHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AGLPLGPFTVHDLRRTGSTLLNEVGFNGDWIEKCLAHEEGRSSRSIYNKAEYAEQRRHML
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QEWADMVDAWIDGRTHVPKLLPENTSVPVLSAAL
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]