Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ligD
Identifier: 120611188
GI number: 120611188
Start: 2760685
End: 2763504
Strand: Reverse
Name: ligD
Synonym: Aave_2519
Alternate gene names: NA
Gene position: 2763504-2760685 (Counterclockwise)
Preceding gene: 120611189
Following gene: 120611178
Centisome position: 51.63
GC content: 72.02
Gene sequence:
>2820_bases ATGGCACGACGCTCCAGGACCTCCGGCACTGCGCAGGAAGCGCCGCGGAAAGCGCCGCAAAAGGCGCCACCGGACGCCCT CGCAGACTACGCCCGCAAGCGGGACTTCCGCAACACCCCCGAGCCCGGCGCGGAGCCGGGCGACGCCCTGCCCCGGGGCG CGCTGCGCTTCGTGGTGCAGAAGCACTGGGCGAGCCGCCTGCACTACGACTTCCGGCTGGAAATCGACGGCACCATGAAG AGCTGGGCGGTGCCCAAGGGCCCGAGCTTCGATCCCAGGGACAAGCGCATGGCCGTGCAGGTCGAAGACCATCCGGTCGC CTACAACCGCTTCGAGGGCCAGATTCCCGCGCGGCAGTACGGCGCGGGCCGCGTCATCATCTGGGACAAGGGCTACTGGG TGCCGCTGGAGGACCCGGCCCGCGCGTGGCGGGCGGGCAAGCTCAAGTTCGAACTGCACGGCCACAAGCTCCAGGGCCGG TGGACGCTGGTGCGCATGCACGGCCGGGGCAACGAGCGCCAGCCGCCGTGGCTGCTCATCAAGGAGCGCGACGGCCTGGA GCGCGATGCCGTCGAGTACAGCGTGGTGGACGCCCTGCCGGACAGCGTGAAGTCGCTGCCCGACCTGCCTGAGCCCGCGC CCGCGCGGGGCAGGCAAGCCCCTGCCCCTGCCGCCTCATCCCCCGCCCGCAGGACGGCCGCCCGCGGCAAGGCTGCGGCC TCGGCCCCCGCGCCGGCCCCGGAGCCGGCGGCAGGCAGGACTGCTCGGGCCGGAACGTCCCCGCGCCCGAAGAAGGCGGC CCTGCCCGCGGCGCTGGCGCCGCAACTGGCCACCCTGGTGGACGGCCCGCCCACCGACCTGGCCGAATGGATGTTCGAGC TCAAGTTCGACGGCTACCGCATCCTCGCCCGGATCGAAGGCGGCGAGGTGCGCCTCATCACCCGCAACGGCAACGACTGG ACCCACCGCATGCCCGGCCTGGCGCGCGCCGTGCGTGCCCTGCCGGTGGAGTCCGGCTGGATCGATGGCGAAATCGTGGT GCCCGACCGGCACGGCATTCCGGATTTCCAGGCGCTGCAGAACGCCTTCGAGAGCGGGCGCCGGCCCGGACGCAGCGCGG CGGGCAGCCCGGACGACGGCGCGGTGGACCGCAGCGGCCTGGTCTTCTATGTCTTCGATCTGCCCTTCCTCAACGGCCAT GACCTGCGGGGCCTGCCGCTGGCAGAGCGCAGGCAGGCGTTGCGCACGCTCGTGGCCGAGGCCGGCAGCGATACGGTGCG CTTCAGCGACGCGTTCGAGGCATCGCCCGGCGAGCTGATCGCCTCGGCTTGCCGGCTCGGCTTCGAGGGCGTGATCGGCA AGCGCGTGTCGTCGGCCTACGGGTCCGGCCGGTCGGCCGACTGGATCAAGCTCAAGTGCGGGCAGCGGCAGGAGTTCGTG ATCGGTGGCTATACCGACCCGCAGGGCACGCGCACCGGCCTCGGCTCGCTGCTGCTGGGCGTGCATGGCGACGACGGGCA GTTGCACTATGCCGGCAACGTGGGCTCCGGCTTCAGCGAGCGCACCTTGACGACGCTGCTCGGGCTGCTGCGCTCACTCG CCGCAGACCGCAGTCCCTTCGCCGAAGGCACGCAGGTGGGCCGCAAGGCGCACTGGGTCAAGCCGCAACTGCTCGCGGAG GTGGCCTTCGCGGGCTGGACGCAGACGCGCCATGTCCGCCAGGCGGTGTTTCGCGGCCTGCGCGAGGACAAGCCCCCGCG CGAGATCGTGCGCGAGACGCCCGCACCGGCCGCCACGGTGGCGGGCCCGTCCCCCACCCCGCCGGCCGCTCCACGCCCGG CTTCATCCGAAGCCACGCCCTCCAGGGCCCGCTCCACCATGACCTCCCGCAGAACCGCATCCGCCCCCTCGCCCGCCTCC CCGCCCTCTTCGCTGCGCGTGACCCACGGCGACCGCGTGATCGATGCCGCGAGCGGAACCACCAAGCTGGACCTGGTGCG CTACTACGCGCTGGTCGCGCCCCTGATGATGGAACACCTGCGCCAGCGCCCCGTCTCGGTCGTGCGGGCTCCGGAAGGCG TGGGCGGGGAGCTCTTCTTCCAGAAGCATCCGGAGCACGGATCGGTGGACGGCGTGCGGACGCTGGACCCGGCGCTGGAC CCCGGCCATCCGCCCCTGGCCGAGATCGCGGGGCCGGAAGGCCTGCCGGCCTGGGCCCAGATGAACACCATCGAGTTCCA CAGCTGGAACGCCCGCAGCGACCGCATCGACCGGCCCGACCGGATGGCCTTCGACCTCGACCCCGGCGAAGGCGTGCCCT GGGACAAGGTGCAGGAGGCCACCACGCTGATGCGCGTGATGCTCACGGAGCTGGGCCTGCCGGGCTTTCTCAAGACCAGC GGGGGCAAGGGGCTGCACGTGGTCGTGCCCATCAAGCGCCTGTACGGCTGGGATGCGGTGAAGGGCTTTTCCCAGGCGGT GGTGCAGCACATGGCGCGCACGATCCCGCAGCTGTTCGTGGCCAAGAGCGGGCCGCGCAACCGCGTGGGAAAAATCTTCG TGGACTACCTGCGCAACGGCTTCGGCGCCACCACGGTGAGCGCATGGTCCGCCCGGGCACGACCCGGCCTGGGCATTTCC GTGCCGCTGCGCTGGGATGAACTGGGAGCGCTCTCGAGCAGCACCGAATGGACCGTGGCCACGGTGGAAGACCGGCTGCG CGAAGGCAACGCGCCCTGGGACGGCTACGCCAAGGCGGCGGTCTCCATCACGCAGGCCATGAAGATGCTCGGGTACGAAC CGCCGCGCGGCGGGCGGTGA
Upstream 100 bases:
>100_bases GCGCGAAGGGCAAGGCCAAGGCCCCCGCGAAGCGCGCGACCGCCAAGTCCTCCGCGAAAAGCGCCCCTGCGGGCCGCAAG GCCGCCTGAGCCCGCACGCC
Downstream 100 bases:
>100_bases TCGCCCTCCTGCCAGCTCTCAGGGGGCGTGGTGGTGCAGGTCGTGGGGCTCGGTGGAGGCCACCTGCCGGCCGTTCATCC CCAGTTTGGCGAGCAGTTGC
Product: ATP-dependent DNA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 939; Mature: 938
Protein sequence:
>939_residues MARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQKHWASRLHYDFRLEIDGTMK SWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQYGAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGR WTLVRMHGRGNERQPPWLLIKERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYRILARIEGGEVRLITRNGNDW THRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQNAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGH DLRGLPLAERRQALRTLVAEAGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPFAEGTQVGRKAHWVKPQLLAE VAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATVAGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPAS PPSSLRVTHGDRVIDAASGTTKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEATTLMRVMLTELGLPGFLKTS GGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFVAKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGIS VPLRWDELGALSSSTEWTVATVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR
Sequences:
>Translated_939_residues MARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQKHWASRLHYDFRLEIDGTMK SWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQYGAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGR WTLVRMHGRGNERQPPWLLIKERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYRILARIEGGEVRLITRNGNDW THRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQNAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGH DLRGLPLAERRQALRTLVAEAGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPFAEGTQVGRKAHWVKPQLLAE VAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATVAGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPAS PPSSLRVTHGDRVIDAASGTTKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEATTLMRVMLTELGLPGFLKTS GGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFVAKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGIS VPLRWDELGALSSSTEWTVATVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR >Mature_938_residues ARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQKHWASRLHYDFRLEIDGTMKS WAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQYGAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRW TLVRMHGRGNERQPPWLLIKERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAAS APAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYRILARIEGGEVRLITRNGNDWT HRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQNAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGHD LRGLPLAERRQALRTLVAEAGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFVI GGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPFAEGTQVGRKAHWVKPQLLAEV AFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATVAGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPASP PSSLRVTHGDRVIDAASGTTKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALDP GHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEATTLMRVMLTELGLPGFLKTSG GKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFVAKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISV PLRWDELGALSSSTEWTVATVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR
Specific function: Unknown
COG id: COG1793
COG function: function code L; ATP-dependent DNA ligase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent DNA ligase family [H]
Homologues:
Organism=Homo sapiens, GI4557719, Length=302, Percent_Identity=28.476821192053, Blast_Score=84, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012309 - InterPro: IPR012310 - InterPro: IPR014146 - InterPro: IPR002755 - InterPro: IPR014144 - InterPro: IPR014145 - InterPro: IPR012340 - InterPro: IPR016027 [H]
Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]
EC number: NA
Molecular weight: Translated: 102006; Mature: 101875
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: PS50160 DNA_LIGASE_A3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQ CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY HHHHHHCCEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHH GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI CCCEEEEECCCEEEECCCHHHHHHCCCEEEEECCCEECCEEEEEEEECCCCCCCCCEEEE KERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA ECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYR CCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEE ILARIEGGEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQ EEEEECCCEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHH NAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERRQALRTLVAE HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH AGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV CCCCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEE IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPF EECCCCCCCCHHCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC AEGTQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATV HHHHHHCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEC AGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPASPPSSLRVTHGDRVIDAASGT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECCCCC TKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD CHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCC PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEA CCCCCHHHHCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHH TTLMRVMLTELGLPGFLKTSGGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFV HHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVA HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCHHHHCCCCCCCCEEEE TVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR EHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ARRSRTSGTAQEAPRKAPQKAPPDALADYARKRDFRNTPEPGAEPGDALPRGALRFVVQ CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY HHHHHHCCEEEEEEECCCHHHCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCHHHH GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI CCCEEEEECCCEEEECCCHHHHHHCCCEEEEECCCEECCEEEEEEEECCCCCCCCCEEEE KERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPARGRQAPAPAASSPARRTAARGKAAA ECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC SAPAPAPEPAAGRTARAGTSPRPKKAALPAALAPQLATLVDGPPTDLAEWMFELKFDGYR CCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEE ILARIEGGEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQ EEEEECCCEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHH NAFESGRRPGRSAAGSPDDGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERRQALRTLVAE HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH AGSDTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYGSGRSADWIKLKCGQRQEFV CCCCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEE IGGYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPF EECCCCCCCCHHCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC AEGTQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAATV HHHHHHCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEC AGPSPTPPAAPRPASSEATPSRARSTMTSRRTASAPSPASPPSSLRVTHGDRVIDAASGT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECCCCC TKLDLVRYYALVAPLMMEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALD CHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCC PGHPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEA CCCCCHHHHCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHH TTLMRVMLTELGLPGFLKTSGGKGLHVVVPIKRLYGWDAVKGFSQAVVQHMARTIPQLFV HHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AKSGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVA HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCHHHHCCCCCCCCEEEE TVEDRLREGNAPWDGYAKAAVSITQAMKMLGYEPPRGGR EHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]