Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ydhC [H]
Identifier: 120611178
GI number: 120611178
Start: 2748578
End: 2749213
Strand: Reverse
Name: ydhC [H]
Synonym: Aave_2509
Alternate gene names: 120611178
Gene position: 2749213-2748578 (Counterclockwise)
Preceding gene: 120611188
Following gene: 120611177
Centisome position: 51.36
GC content: 68.55
Gene sequence:
>636_bases ATGTCCACCGCCTCGCTCACCCCGCGCGCCCTCTACGAAGAGGTGGCGGAGCAATTGCGCCAGCGCATCTTCCGCCGCGA GCTGCAGCCCGGCAGCTGGATCGACGAGCTGAAGATCGCCGAGGAATTCGGCATCAGCCGCACCCCGCTTCGCGAAGCGC TGAAGGTGCTCGCGGCCGAGGGCCTCGTGACGATGAAGGTGCGGCGCGGCGCCTACGTCACCGAAGTGTCCGACAAGGAC CTGCGCGACGTCTATCACTTGCTGGCGCTACTGGAGAGCGACGCCGCCCGCGTGGTCGCGCAGCGCGCTACCGATGCGCA GTTGCGGGAACTGGAGGCGCTGCACGCCGAACTGGCCGCGTGCGTGGACGACCGGGACCGCTTCTTCGGCGTGAACGAGC GGTTCCACATGCGACTGCTCGAACTGGCGGACAACCGCTGGCGCAACCAGATGGTCGCCGACCTGCGCAAGGTCATGAAA CTCAACCGCCACAACTCCCTGCTGCGCCAGGGCCGCATCGAAGAGTCGCTGCGCGAGCACGCGGACATCCTGGGCGCCCT GCAGGCCCGGAACGGTGAACGCGCCGCGGCCGCGATGCTGGACCATTTCAGCCAGGGGCTGCAGGCCGCGGCCTGA
Upstream 100 bases:
>100_bases TCCGCGCCGGCTTGTCTCCTGGCGTGCGCGGGAAGCAAGGGCTAGTCTAGCCGATTCCGTAATTATTAATTCATCATTTT TTGACGTACCATTCCGCGCC
Downstream 100 bases:
>100_bases GCCTTCCCTTCGCCCTTCCCGACCATTCACGCCCGCCCCCTTAGGCCCGGCGGCTGACGCGGACCTTGCCGCGTCGCGTG CATGCATGCATGCATGCATG
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKD LRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMK LNRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA
Sequences:
>Translated_211_residues MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKD LRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMK LNRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA >Mature_210_residues STASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKDL RDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKL NRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787821, Length=191, Percent_Identity=31.413612565445, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI48994961, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=2e-13,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011711 - InterPro: IPR000485 - InterPro: IPR000524 - InterPro: IPR011991 [H]
Pfam domain/function: PF07729 FCD; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 24041; Mature: 23910
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAE CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC GLVTMKVRRGAYVTEVSDKDLRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAA CHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKLNRHNSLLRQGRIEESLREH HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADILGALQARNGERAAAAMLDHFSQGLQAAA HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAE CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC GLVTMKVRRGAYVTEVSDKDLRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAA CHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKLNRHNSLLRQGRIEESLREH HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADILGALQARNGERAAAAMLDHFSQGLQAAA HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]