Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ydhC [H]

Identifier: 120611178

GI number: 120611178

Start: 2748578

End: 2749213

Strand: Reverse

Name: ydhC [H]

Synonym: Aave_2509

Alternate gene names: 120611178

Gene position: 2749213-2748578 (Counterclockwise)

Preceding gene: 120611188

Following gene: 120611177

Centisome position: 51.36

GC content: 68.55

Gene sequence:

>636_bases
ATGTCCACCGCCTCGCTCACCCCGCGCGCCCTCTACGAAGAGGTGGCGGAGCAATTGCGCCAGCGCATCTTCCGCCGCGA
GCTGCAGCCCGGCAGCTGGATCGACGAGCTGAAGATCGCCGAGGAATTCGGCATCAGCCGCACCCCGCTTCGCGAAGCGC
TGAAGGTGCTCGCGGCCGAGGGCCTCGTGACGATGAAGGTGCGGCGCGGCGCCTACGTCACCGAAGTGTCCGACAAGGAC
CTGCGCGACGTCTATCACTTGCTGGCGCTACTGGAGAGCGACGCCGCCCGCGTGGTCGCGCAGCGCGCTACCGATGCGCA
GTTGCGGGAACTGGAGGCGCTGCACGCCGAACTGGCCGCGTGCGTGGACGACCGGGACCGCTTCTTCGGCGTGAACGAGC
GGTTCCACATGCGACTGCTCGAACTGGCGGACAACCGCTGGCGCAACCAGATGGTCGCCGACCTGCGCAAGGTCATGAAA
CTCAACCGCCACAACTCCCTGCTGCGCCAGGGCCGCATCGAAGAGTCGCTGCGCGAGCACGCGGACATCCTGGGCGCCCT
GCAGGCCCGGAACGGTGAACGCGCCGCGGCCGCGATGCTGGACCATTTCAGCCAGGGGCTGCAGGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
TCCGCGCCGGCTTGTCTCCTGGCGTGCGCGGGAAGCAAGGGCTAGTCTAGCCGATTCCGTAATTATTAATTCATCATTTT
TTGACGTACCATTCCGCGCC

Downstream 100 bases:

>100_bases
GCCTTCCCTTCGCCCTTCCCGACCATTCACGCCCGCCCCCTTAGGCCCGGCGGCTGACGCGGACCTTGCCGCGTCGCGTG
CATGCATGCATGCATGCATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKD
LRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMK
LNRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA

Sequences:

>Translated_211_residues
MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKD
LRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMK
LNRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA
>Mature_210_residues
STASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSDKDL
RDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAACVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKL
NRHNSLLRQGRIEESLREHADILGALQARNGERAAAAMLDHFSQGLQAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=191, Percent_Identity=31.413612565445, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI48994961, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24041; Mature: 23910

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC
GLVTMKVRRGAYVTEVSDKDLRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAA
CHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKLNRHNSLLRQGRIEESLREH
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADILGALQARNGERAAAAMLDHFSQGLQAAA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STASLTPRALYEEVAEQLRQRIFRRELQPGSWIDELKIAEEFGISRTPLREALKVLAAE
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHC
GLVTMKVRRGAYVTEVSDKDLRDVYHLLALLESDAARVVAQRATDAQLRELEALHAELAA
CHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVDDRDRFFGVNERFHMRLLELADNRWRNQMVADLRKVMKLNRHNSLLRQGRIEESLREH
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADILGALQARNGERAAAAMLDHFSQGLQAAA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]