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The map label for this gene is yjfF [H]

Identifier: 120610923

GI number: 120610923

Start: 2473317

End: 2474333

Strand: Reverse

Name: yjfF [H]

Synonym: Aave_2249

Alternate gene names: 120610923

Gene position: 2474333-2473317 (Counterclockwise)

Preceding gene: 120610924

Following gene: 120610922

Centisome position: 46.23

GC content: 68.93

Gene sequence:

>1017_bases
ATGAGCGCCGTCATGACCCCGGCCGCGGCCACGGCGCCCGCCACGCGCGGCCCGCGCCTGAACGCCAGGTACCTGCCGCT
GGCCGCCACCATCGCGCTCTTCGTGGCCATGGCCACGCTCGGCTCGGTGCGCTACACGGGCTTTTTCTCGGCCCAGGTGT
TCCTCAACCTGCTGATCGACAACGCCTTCCTCATCATCGTCGCCGTGGGCATGACCTTCGTCATCCTCTCGGGCGGCATC
GACCTGTCGGTGGGCGCCGTGGTCGCGCTGACCACCATGGTGTTCGCGTCGCTGGTGGAGCGCCACGGCTGGAGTCCCGC
GGCGGCCGTGCCCGTGGTGCTGCTGATGGGCACCTGCTTCGGCGCGTTCATGGGCTTCCTGATCGAGCGCTTCCGGCTGC
AGCCCTTCATCGTGACGCTGGCCGGCATGTTCCTCGCGCGGGGCCTGTGCTACCTCATCAGCATCGACTCGATCAGCATC
ACGCACGAAGGCTATTCGGAACTCGCGCAGTGGCGCCTGCAGCTGTCCGAAACCGCCTCGATCTCGCCGGGTGCGCTGAT
CGCCATCGCCGTGGTGCTGGCCGGCGTCTTCATCGCGCACTGCACGCCGTTCGGCCGCGCGGTCTATGCCGTGGGCGGCA
GCGAGCACTCGGCCGTGCTGATGGGCCTGCCCGTGCGCTCCACGCTGGTGGGGGTCTATACGCTTTCGGGCTTCTGCTCG
GCACTGGCCGGCGTGGTGTTCACCTTCTACATGCTCTCGGGCTACGGGCTGCACGCCGTGGGCATGGAGCTGGACGCCAT
CGCCGCCGTCGTCATCGGCGGCACCCTGCTCACGGGCGGCGTGGGCTACGTGGCCGGCACGCTCTTCGGCGTGCTGATGC
TCGGAATCATCCAGACGCTCATCTCCTTCGACGGCACGCTCAGTTCGTGGTGGACGCGCATCGCCGTCGGCGTGCTGCTG
TTCGTCTTCTGCCTGCTGCAACGCCTGCTCACGCGCCGCTCCGGCCGGCGGCGCTGA

Upstream 100 bases:

>100_bases
AGGCGGTGGTGGTGTTCGTCGTCATGCTGCTGCAGTCGCCCGAGTTCCGCGCCCAGGTGGGCCTGCTCGCGCGCCGCCCC
GCCGCCGGGAGGGCCCTGCC

Downstream 100 bases:

>100_bases
CCCGACCCCGCCCTTTTCGCTTTCCTTTCCCGCATCCCTCCCGAGCTCCCACGATGACCACCCCTCCGCGCAAACTCCGC
TCCACCGAATGGTTCGGCAC

Product: inner membrane ABC transporter permease YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSAVMTPAAATAPATRGPRLNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLIDNAFLIIVAVGMTFVILSGGI
DLSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCFGAFMGFLIERFRLQPFIVTLAGMFLARGLCYLISIDSISI
THEGYSELAQWRLQLSETASISPGALIAIAVVLAGVFIAHCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCS
ALAGVVFTFYMLSGYGLHAVGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIAVGVLL
FVFCLLQRLLTRRSGRRR

Sequences:

>Translated_338_residues
MSAVMTPAAATAPATRGPRLNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLIDNAFLIIVAVGMTFVILSGGI
DLSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCFGAFMGFLIERFRLQPFIVTLAGMFLARGLCYLISIDSISI
THEGYSELAQWRLQLSETASISPGALIAIAVVLAGVFIAHCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCS
ALAGVVFTFYMLSGYGLHAVGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIAVGVLL
FVFCLLQRLLTRRSGRRR
>Mature_337_residues
SAVMTPAAATAPATRGPRLNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLIDNAFLIIVAVGMTFVILSGGID
LSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCFGAFMGFLIERFRLQPFIVTLAGMFLARGLCYLISIDSISIT
HEGYSELAQWRLQLSETASISPGALIAIAVVLAGVFIAHCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCSA
LAGVVFTFYMLSGYGLHAVGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIAVGVLLF
VFCLLQRLLTRRSGRRR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=317, Percent_Identity=53.6277602523659, Blast_Score=307, Evalue=7e-85,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=35.8803986710963, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=300, Percent_Identity=33.6666666666667, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI145693152, Length=278, Percent_Identity=32.0143884892086, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789992, Length=344, Percent_Identity=31.6860465116279, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=30.1003344481605, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787794, Length=245, Percent_Identity=29.7959183673469, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693214, Length=232, Percent_Identity=33.6206896551724, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788471, Length=222, Percent_Identity=30.6306306306306, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787793, Length=299, Percent_Identity=29.7658862876254, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35608; Mature: 35477

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVMTPAAATAPATRGPRLNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLID
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
NAFLIIVAVGMTFVILSGGIDLSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GAFMGFLIERFRLQPFIVTLAGMFLARGLCYLISIDSISITHEGYSELAQWRLQLSETAS
HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHEEEECCEEECHHHHHHHHHHHHHHHHCCC
ISPGALIAIAVVLAGVFIAHCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCS
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
ALAGVVFTFYMLSGYGLHAVGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTL
HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ISFDGTLSSWWTRIAVGVLLFVFCLLQRLLTRRSGRRR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAVMTPAAATAPATRGPRLNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLID
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
NAFLIIVAVGMTFVILSGGIDLSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
GAFMGFLIERFRLQPFIVTLAGMFLARGLCYLISIDSISITHEGYSELAQWRLQLSETAS
HHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHEEEECCEEECHHHHHHHHHHHHHHHHCCC
ISPGALIAIAVVLAGVFIAHCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCS
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
ALAGVVFTFYMLSGYGLHAVGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTL
HHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ISFDGTLSSWWTRIAVGVLLFVFCLLQRLLTRRSGRRR
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]