Click here to switch to the map view.

The map label for this gene is ytfT [H]

Identifier: 120610924

GI number: 120610924

Start: 2474330

End: 2475385

Strand: Reverse

Name: ytfT [H]

Synonym: Aave_2250

Alternate gene names: 120610924

Gene position: 2475385-2474330 (Counterclockwise)

Preceding gene: 120610925

Following gene: 120610923

Centisome position: 46.24

GC content: 69.98

Gene sequence:

>1056_bases
ATGGCTGAACTCAAGCCCAGTCCCCTCTCCCCCGCGGCGCTGCTGCGCCACCGCCTCGCCTGGCCGGTGATCACGCTGCT
GCTCCTGCTGGCGATCAACGCGGCCTTCAACCCGGGTTTCCTGCACATCGAATGGCGCGACGGGCATTTCTACGGCAGCC
TGATCGACATCCTCAACCGCGCCGCGCCCCTGGTGCTGGTGTCGCTGGGCATGACCCTGGTGATCGCCACGCGCGGCATC
GACATCTCGGTGGGTGCCACGGTGGCCATCGCCGCGGCCGTGGCCGCCTGGCTGATCGGCGGATCGGTGTCGGCCAACGA
AAGCCGCTTTCCGCTGCCGGTGGCCATCCTGGGCGCACTGGGTGTCGCGCTGCTGTGCGGCGTCTGGAACGGCGTGCTGG
TGGCCAGGGTGGGCATGCAGCCCATCATCGCCACGCTGATCCTGATGGTGGCGGGCCGGGGCATCGCCCAGCTCATCACC
GACGGGCAGATCATCACCATCTACTACACCCCCTACTTCTTCATCGGCGGGGGCTATCTGGCCGGGCTGCCGTTCTCGCT
CTTCGTGGCGGCGGCGGTGTTCGCCGTACTCCACCTCGCCATCACGCGCACGGCGCTGGGCCTGTTCATCCAGGCCGTGG
GCGTCAATCCCACGGCGGCGCGGGTGGCCGGCGTGCAGGCGGGGCGGCTCATCATGGCGGCCTACGTGTTCTGCGGCGCG
TGCGCGGGCATCGCGGGCCTGCTCATCAGCTCCAACGTGAAGAGCGCGGACGGCAACAACGCCGGCCAGCTGATGGAGCT
GGACGCCATCCTGGCCGTGACGCTCGGCGGCACGGCGCTCACCGGCGGGCGCTTCAGCCTCGCGGGCAGCGTGATCGGCG
CGCTCATCATCCAGACGCTGACCTACGCCATCTATTCGCTGGGCGTGCCGCCCGAGGTGAACCTCGTGGTGAAGGCGGTG
GTGGTGTTCGTCGTCATGCTGCTGCAGTCGCCCGAGTTCCGCGCCCAGGTGGGCCTGCTCGCGCGCCGCCCCGCCGCCGG
GAGGGCCCTGCCATGA

Upstream 100 bases:

>100_bases
ACGGCGTCTGCTGGCATGGCCTGCTCCGCGGCCTTCGGACCAACGGGGCCATCGTTGCGTTACGGGCTGCGGGCAATGCC
CTTCAAGGTGGATGACCGGA

Downstream 100 bases:

>100_bases
GCGCCGTCATGACCCCGGCCGCGGCCACGGCGCCCGCCACGCGCGGCCCGCGCCTGAACGCCAGGTACCTGCCGCTGGCC
GCCACCATCGCGCTCTTCGT

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MAELKPSPLSPAALLRHRLAWPVITLLLLLAINAAFNPGFLHIEWRDGHFYGSLIDILNRAAPLVLVSLGMTLVIATRGI
DISVGATVAIAAAVAAWLIGGSVSANESRFPLPVAILGALGVALLCGVWNGVLVARVGMQPIIATLILMVAGRGIAQLIT
DGQIITIYYTPYFFIGGGYLAGLPFSLFVAAAVFAVLHLAITRTALGLFIQAVGVNPTAARVAGVQAGRLIMAAYVFCGA
CAGIAGLLISSNVKSADGNNAGQLMELDAILAVTLGGTALTGGRFSLAGSVIGALIIQTLTYAIYSLGVPPEVNLVVKAV
VVFVVMLLQSPEFRAQVGLLARRPAAGRALP

Sequences:

>Translated_351_residues
MAELKPSPLSPAALLRHRLAWPVITLLLLLAINAAFNPGFLHIEWRDGHFYGSLIDILNRAAPLVLVSLGMTLVIATRGI
DISVGATVAIAAAVAAWLIGGSVSANESRFPLPVAILGALGVALLCGVWNGVLVARVGMQPIIATLILMVAGRGIAQLIT
DGQIITIYYTPYFFIGGGYLAGLPFSLFVAAAVFAVLHLAITRTALGLFIQAVGVNPTAARVAGVQAGRLIMAAYVFCGA
CAGIAGLLISSNVKSADGNNAGQLMELDAILAVTLGGTALTGGRFSLAGSVIGALIIQTLTYAIYSLGVPPEVNLVVKAV
VVFVVMLLQSPEFRAQVGLLARRPAAGRALP
>Mature_350_residues
AELKPSPLSPAALLRHRLAWPVITLLLLLAINAAFNPGFLHIEWRDGHFYGSLIDILNRAAPLVLVSLGMTLVIATRGID
ISVGATVAIAAAVAAWLIGGSVSANESRFPLPVAILGALGVALLCGVWNGVLVARVGMQPIIATLILMVAGRGIAQLITD
GQIITIYYTPYFFIGGGYLAGLPFSLFVAAAVFAVLHLAITRTALGLFIQAVGVNPTAARVAGVQAGRLIMAAYVFCGAC
AGIAGLLISSNVKSADGNNAGQLMELDAILAVTLGGTALTGGRFSLAGSVIGALIIQTLTYAIYSLGVPPEVNLVVKAVV
VFVVMLLQSPEFRAQVGLLARRPAAGRALP

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693214, Length=335, Percent_Identity=47.7611940298507, Blast_Score=241, Evalue=7e-65,
Organism=Escherichia coli, GI1790191, Length=328, Percent_Identity=32.6219512195122, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1788896, Length=323, Percent_Identity=30.9597523219814, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693152, Length=276, Percent_Identity=29.7101449275362, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790524, Length=267, Percent_Identity=30.7116104868914, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=38.3458646616541, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=286, Percent_Identity=29.3706293706294, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787793, Length=311, Percent_Identity=29.2604501607717, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082395, Length=254, Percent_Identity=31.496062992126, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787794, Length=298, Percent_Identity=29.8657718120805, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36207; Mature: 36076

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELKPSPLSPAALLRHRLAWPVITLLLLLAINAAFNPGFLHIEWRDGHFYGSLIDILNR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
AAPLVLVSLGMTLVIATRGIDISVGATVAIAAAVAAWLIGGSVSANESRFPLPVAILGAL
HHHHHHHHHHHHEEEEECCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
GVALLCGVWNGVLVARVGMQPIIATLILMVAGRGIAQLITDGQIITIYYTPYFFIGGGYL
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCEEEECCCHH
AGLPFSLFVAAAVFAVLHLAITRTALGLFIQAVGVNPTAARVAGVQAGRLIMAAYVFCGA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHH
CAGIAGLLISSNVKSADGNNAGQLMELDAILAVTLGGTALTGGRFSLAGSVIGALIIQTL
HHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHEEECCCEECCCCHHHHHHHHHHHHHHHH
TYAIYSLGVPPEVNLVVKAVVVFVVMLLQSPEFRAQVGLLARRPAAGRALP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AELKPSPLSPAALLRHRLAWPVITLLLLLAINAAFNPGFLHIEWRDGHFYGSLIDILNR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
AAPLVLVSLGMTLVIATRGIDISVGATVAIAAAVAAWLIGGSVSANESRFPLPVAILGAL
HHHHHHHHHHHHEEEEECCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
GVALLCGVWNGVLVARVGMQPIIATLILMVAGRGIAQLITDGQIITIYYTPYFFIGGGYL
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCEEEECCCHH
AGLPFSLFVAAAVFAVLHLAITRTALGLFIQAVGVNPTAARVAGVQAGRLIMAAYVFCGA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHH
CAGIAGLLISSNVKSADGNNAGQLMELDAILAVTLGGTALTGGRFSLAGSVIGALIIQTL
HHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHEEECCCEECCCCHHHHHHHHHHHHHHHH
TYAIYSLGVPPEVNLVVKAVVVFVVMLLQSPEFRAQVGLLARRPAAGRALP
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]