Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is era [H]
Identifier: 120609885
GI number: 120609885
Start: 1317406
End: 1318440
Strand: Direct
Name: era [H]
Synonym: Aave_1197
Alternate gene names: 120609885
Gene position: 1317406-1318440 (Clockwise)
Preceding gene: 120609884
Following gene: 120609886
Centisome position: 24.61
GC content: 66.38
Gene sequence:
>1035_bases ATGAACTCCTCTCCTCCCTCCGTTCCCGGCGCACTCCAGGACGACCTGGAGGCCATGCTGGCGGCGGCACGCCCCGGCGC GGCCGTGCCCGCCGCAGCCGGGACCGGCTCCGGCGCGCAGGAGGCCCCGGTGGCCCAGGGCCCGCAACGCTGCGGGCTCA TCGCCATCGTGGGCAAGCCCAATGTCGGCAAATCCACCCTCATGAACGCGCTGGTGGGCCAGAAGATCAGCATCACCTCG CGCAAGGCGCAGACCACGCGCCACCGCATCACCGGTATCCGCACCATGGGTGCGGCCCAGTTCGTTTTCGTCGATACGCC GGGGTTCCAGACCAAGCACAGCACGGCGCTCAACAAGTCGCTCAACAAGACGGTGATGGGGGCGATCGGCGACGTGGATC TGATTCTCTTCGTGGTGGAGGCCGGCAGCTTCACGCTGGCCGACGCCAAGGTGCTGTCGCTGTTCAAGCCCGGCATCCCC ACGCTGCTCATCGCCAACAAGCTCGATACCGTGCACCGCCGCGCGGAGATCGCCCCGTGGCTCAAGGGCATGCAGGAGCG GCATCCGTTCGCGGAGTTCGTGCCGATGTCGGCCAAGAACAAGGGCGATATCGAACGCCTCTTCGGGATCTGCGAGAAGT ACCTGCCCGAGCAGCCCTGGTGGTACGCCGAGGATGAGCTGACGGACCGCAGCGAGAAATTCCTCGCGAGCGAGACCGTG CGCGAGAAGCTGTTCCGCTTCACCGGCGACGAGCTGCCCTACACCTCCACCGTGGTGATCGACAAGTTCGAGGAAGAGCC CAGCAAGACGCACAAGCGCTTTGTCCGCGTCGCGGCGACGATCGTCGTGGAGCGCGATGGCCACAAGGCCATGGTGATCG GCGAAAAGGGCGAGCGCCTCAAGCGCATCAGCACCGACGCCCGCATGGAGCTCGAAAAGCTGCTGGGCGCCAAGGTGTTC CTGGAGGTCTGGGTCAAGGTGCGTTCCGGCTGGGCGGACGACGAGGCCCGGGTGCGGTCCTTCGGGTATGAGTGA
Upstream 100 bases:
>100_bases CGGAACTGGGCCTGACCGAGCGCGGCATCGGCGGATCGCGGAGGGCGGGCGAACAGGCTGCCGCCGCCGCCATGCTGGCC ACCCTGAAAGCGAAACACCC
Downstream 100 bases:
>100_bases CTCCCCCCTGAGTCGCCCGCGGCGCCTTCCCCCAGGGGGACGATGCCTGCGGCCGGGCAAAGCCCGTTCCGCGGCATCTG CTGGCATGGCCTGCTCCGCG
Product: GTP-binding protein Era
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MNSSPPSVPGALQDDLEAMLAAARPGAAVPAAAGTGSGAQEAPVAQGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITS RKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIP TLLIANKLDTVHRRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETV REKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVRVAATIVVERDGHKAMVIGEKGERLKRISTDARMELEKLLGAKVF LEVWVKVRSGWADDEARVRSFGYE
Sequences:
>Translated_344_residues MNSSPPSVPGALQDDLEAMLAAARPGAAVPAAAGTGSGAQEAPVAQGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITS RKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIP TLLIANKLDTVHRRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETV REKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVRVAATIVVERDGHKAMVIGEKGERLKRISTDARMELEKLLGAKVF LEVWVKVRSGWADDEARVRSFGYE >Mature_344_residues MNSSPPSVPGALQDDLEAMLAAARPGAAVPAAAGTGSGAQEAPVAQGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITS RKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIP TLLIANKLDTVHRRAEIAPWLKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETV REKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVRVAATIVVERDGHKAMVIGEKGERLKRISTDARMELEKLLGAKVF LEVWVKVRSGWADDEARVRSFGYE
Specific function: An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism [H]
COG id: COG1159
COG function: function code R; GTPase
Gene ontology:
Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH type-2 domain [H]
Homologues:
Organism=Escherichia coli, GI1788919, Length=294, Percent_Identity=48.6394557823129, Blast_Score=289, Evalue=2e-79, Organism=Drosophila melanogaster, GI24646434, Length=311, Percent_Identity=26.6881028938907, Blast_Score=98, Evalue=7e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005662 - InterPro: IPR006073 - InterPro: IPR015946 - InterPro: IPR009019 - InterPro: IPR004044 - InterPro: IPR002917 - InterPro: IPR005225 [H]
Pfam domain/function: PF07650 KH_2; PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 37751; Mature: 37751
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: PS50823 KH_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSSPPSVPGALQDDLEAMLAAARPGAAVPAAAGTGSGAQEAPVAQGPQRCGLIAIVGKP CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC NVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKHSTALNKS CCCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCHHHHHHHHH LNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLDTVHRRAEIAPW HHHHHHHHCCCCEEEEEEEECCCEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH LKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETV HHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHH REKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVRVAATIVVERDGHKAMVIGEKGERL HHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCEEEEECCCCHHH KRISTDARMELEKLLGAKVFLEVWVKVRSGWADDEARVRSFGYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC >Mature Secondary Structure MNSSPPSVPGALQDDLEAMLAAARPGAAVPAAAGTGSGAQEAPVAQGPQRCGLIAIVGKP CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC NVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTMGAAQFVFVDTPGFQTKHSTALNKS CCCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHEECCCEEEEEEECCCCCCHHHHHHHHH LNKTVMGAIGDVDLILFVVEAGSFTLADAKVLSLFKPGIPTLLIANKLDTVHRRAEIAPW HHHHHHHHCCCCEEEEEEEECCCEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH LKGMQERHPFAEFVPMSAKNKGDIERLFGICEKYLPEQPWWYAEDELTDRSEKFLASETV HHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHH REKLFRFTGDELPYTSTVVIDKFEEEPSKTHKRFVRVAATIVVERDGHKAMVIGEKGERL HHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEECCCEEEEECCCCHHH KRISTDARMELEKLLGAKVFLEVWVKVRSGWADDEARVRSFGYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]