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The map label for this gene is recO

Identifier: 120609886

GI number: 120609886

Start: 1318678

End: 1319460

Strand: Direct

Name: recO

Synonym: Aave_1198

Alternate gene names: 120609886

Gene position: 1318678-1319460 (Clockwise)

Preceding gene: 120609885

Following gene: 120609887

Centisome position: 24.64

GC content: 69.48

Gene sequence:

>783_bases
ATGGCCGCACGCCGTATTTCCGACGAACCCGCCTATGTGCTGCACCGCTACGACTGGAGCGAGTCCAGCCTGATCCTGGA
CGTGTTCACGCGCCACCATGGGCGGGTGGCGCTGGTGGCCAGGGGGGCGAAGAAGCCGACGTCCAATTTCCGCCCCGTGC
TGCTGCCGCTGCAGCCTTTGCGCATCACCTATACGCTGAACGGCGAGGGGCGGGAGGAGGTGCATGGGCTCAAGGGGGCC
GAGTGGGTGGGTGGACACGTCATGCCGACGGGCGACGCGCTGCTGTCGGGCCTGTACCTCAATGAATTGCTGATGCGGCT
GCTGGCGCGCGAGGACACGCATGCCGCGCTGTTCGACGCCTACGCGGGCGTGGTCCGGGTGCTGGCGAGCGAACACGGCG
ACGCGCTGGAGCCCGTGCTGCGCAGTTTCGAGTTGCTGCTGCTGCGCGAGATCGGGCTGCTGCCCGCGCTGGATGTGGAA
ACGTCCACGCTGGCGCCGCTGGCTCCGGCGGCCCGCTACGCGCTCGTGCCGGAGGCCGGCCTGCGGCCGGCCCTTCCTTC
GGACCGCAGCACGCTCGGCGGTGCGCAATGGCGCCAGCTGGAACGCTCGCTGGGCGAGGCCCAGCCCTACACGGCCACGC
TGCGCGCGATCGTGGCGGGGCTCGCCGCCAGCGCGTCTCCGGCCGCGGATCTCAAGCCGCAGCTGCGTGCTCTGCTGCAA
TACCATTGCGGCAGTCCAATGCTGCGGACGCGGCAGCTCATGATCGATCTCCAATCCCTATGA

Upstream 100 bases:

>100_bases
CCGTCGTCCCGGCATGCATCTTCGGTTATCCGATTTCGGGACAATGGCCTGCTGCGCTCTGCCTGCCAACGCCAGGCCGC
GATTGATTGCATAGCCCTCC

Downstream 100 bases:

>100_bases
CCCAGCATTCCGTGCGTACTGCCCTGTCGGTGAACGTCAACAAGGTGGCCCTGGTGCGCAACACGCGCCACCTGGGCATT
CCCAGCGTGGAGCGCGCCGC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAARRISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPLRITYTLNGEGREEVHGLKGA
EWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDAYAGVVRVLASEHGDALEPVLRSFELLLLREIGLLPALDVE
TSTLAPLAPAARYALVPEAGLRPALPSDRSTLGGAQWRQLERSLGEAQPYTATLRAIVAGLAASASPAADLKPQLRALLQ
YHCGSPMLRTRQLMIDLQSL

Sequences:

>Translated_260_residues
MAARRISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPLRITYTLNGEGREEVHGLKGA
EWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDAYAGVVRVLASEHGDALEPVLRSFELLLLREIGLLPALDVE
TSTLAPLAPAARYALVPEAGLRPALPSDRSTLGGAQWRQLERSLGEAQPYTATLRAIVAGLAASASPAADLKPQLRALLQ
YHCGSPMLRTRQLMIDLQSL
>Mature_259_residues
AARRISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPLRITYTLNGEGREEVHGLKGAE
WVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDAYAGVVRVLASEHGDALEPVLRSFELLLLREIGLLPALDVET
STLAPLAPAARYALVPEAGLRPALPSDRSTLGGAQWRQLERSLGEAQPYTATLRAIVAGLAASASPAADLKPQLRALLQY
HCGSPMLRTRQLMIDLQSL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=206, Percent_Identity=37.8640776699029, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ACIAC (A1TLF2)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_969564.1
- ProteinModelPortal:   A1TLF2
- STRING:   A1TLF2
- GeneID:   4665183
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_1198
- NMPDR:   fig|397945.5.peg.1047
- eggNOG:   COG1381
- HOGENOM:   HBG645116
- OMA:   DWSESSL
- PhylomeDB:   A1TLF2
- ProtClustDB:   CLSK951305
- BioCyc:   AAVE397945:AAVE_1198-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 28374; Mature: 28243

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARRISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPL
CCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCE
RITYTLNGEGREEVHGLKGAEWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDA
EEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YAGVVRVLASEHGDALEPVLRSFELLLLREIGLLPALDVETSTLAPLAPAARYALVPEAG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEECCCCC
LRPALPSDRSTLGGAQWRQLERSLGEAQPYTATLRAIVAGLAASASPAADLKPQLRALLQ
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YHCGSPMLRTRQLMIDLQSL
HHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AARRISDEPAYVLHRYDWSESSLILDVFTRHHGRVALVARGAKKPTSNFRPVLLPLQPL
CCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCE
RITYTLNGEGREEVHGLKGAEWVGGHVMPTGDALLSGLYLNELLMRLLAREDTHAALFDA
EEEEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
YAGVVRVLASEHGDALEPVLRSFELLLLREIGLLPALDVETSTLAPLAPAARYALVPEAG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEECCCCC
LRPALPSDRSTLGGAQWRQLERSLGEAQPYTATLRAIVAGLAASASPAADLKPQLRALLQ
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YHCGSPMLRTRQLMIDLQSL
HHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA