Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is omp32 [H]
Identifier: 120609816
GI number: 120609816
Start: 1233382
End: 1234407
Strand: Reverse
Name: omp32 [H]
Synonym: Aave_1125
Alternate gene names: 120609816
Gene position: 1234407-1233382 (Counterclockwise)
Preceding gene: 120609819
Following gene: 120609813
Centisome position: 23.06
GC content: 65.11
Gene sequence:
>1026_bases ATGAAAAAAAACCTGATCGCGTTGAGCGCCGCGCTGCTGTGCGCCGCCGGCGCCCACGCCCAGAGTTCGGTCCAGCTGAC CGGACTGTCGGACATCTACGTGGGCTCCATGAAGATGGCCGGCGATGCGGACCGCCGCTCGGTGGTCAACAGCGGAGGCC TGACCACCTCGTGGTTCGGCTTCAAGGGCACGGAAGACCTGGGCGGCGGGCTGAAGGCCAGCTTCCAGCTGACCTCCTTC CTGCAGGTCGACACGGGCACGCAGGGCCGCTTCGCGAACGACACCTTCTTCTCGCGTGACGCGAACGTGAGCCTGTCGGG CGATTTCGGCTCCGTGCTGCTGGGCCGCTGGATGGCCCCCAACTTCCTGCCGTCGGTGGTGGGCAATCCGCTGGGCGATT CGTTCACGTTCTCGCCGCTGATCCTGCACATGAACGTGCCCCTGTTCAACGGCACGGGCTGGGCCGCGACGACGCCGGCC GACACGGGCTGGAGCAACCAGATCGTCTACAGCACGCCGAAGATCGGCGGCTTCTCCGCGAACATCCAGTACCAGTTCGG CGAGCAGGCGGGCAACAACGGCCGCAAGAACGTGGGCGCGAATTTCTTCTATTTCGGCGGCCCGCTGACGCTGACCGGCT TCTACGAGCGCGACCAGATCGCCAACCCCGGCCAGGGCGCCTACCTCGGCACCACCAGGAAGGACTGGATGCTGCTGGGC GCCTATGACTTCGGCATGGTCAAGCCCTTCCTGAGCTACGGCGAGGCCAAGGCCGACAACACCAGCAACAAGGCCAGGAC GATGCAGATCGGCGCCTCCATCCCCGCGGGTCCCTCGGGCAAGGTGCTGGTGGACTGGGTGAAGACCGAAATGACGCAGA CCGACATCGACCGCAAGACCTTCACGGTGGGCTACGACTACTTCCTGTCCAAGCGCACCGATGTCTATGCGATGCTGATG AACGACCGCATCACCGCGCAGGCCAAGGGCAACAGCTTCGGCGTGGGCATCCGCCACCGCTTCTGA
Upstream 100 bases:
>100_bases CGCGTCTTTCCCGGGTGCGCGGCGGCGGGGCGACCTGCTCCGGTGCCTCCATCCGATCCTTTTCCCCTTTTGTTTGTCTT TGCCGTTGGACGGGAGTCTT
Downstream 100 bases:
>100_bases CGCGAGCCTCCTGCAGGACAAAGAGCGCGGGAAGCGATTCCCGCGCTCTTTTTTTCATTGCATGGGGCGTCGCCGCGGGG ACGGTCAGATCTTGCGCGAC
Product: porin
Products: NA
Alternate protein names: OMP32 [H]
Number of amino acids: Translated: 341; Mature: 341
Protein sequence:
>341_residues MKKNLIALSAALLCAAGAHAQSSVQLTGLSDIYVGSMKMAGDADRRSVVNSGGLTTSWFGFKGTEDLGGGLKASFQLTSF LQVDTGTQGRFANDTFFSRDANVSLSGDFGSVLLGRWMAPNFLPSVVGNPLGDSFTFSPLILHMNVPLFNGTGWAATTPA DTGWSNQIVYSTPKIGGFSANIQYQFGEQAGNNGRKNVGANFFYFGGPLTLTGFYERDQIANPGQGAYLGTTRKDWMLLG AYDFGMVKPFLSYGEAKADNTSNKARTMQIGASIPAGPSGKVLVDWVKTEMTQTDIDRKTFTVGYDYFLSKRTDVYAMLM NDRITAQAKGNSFGVGIRHRF
Sequences:
>Translated_341_residues MKKNLIALSAALLCAAGAHAQSSVQLTGLSDIYVGSMKMAGDADRRSVVNSGGLTTSWFGFKGTEDLGGGLKASFQLTSF LQVDTGTQGRFANDTFFSRDANVSLSGDFGSVLLGRWMAPNFLPSVVGNPLGDSFTFSPLILHMNVPLFNGTGWAATTPA DTGWSNQIVYSTPKIGGFSANIQYQFGEQAGNNGRKNVGANFFYFGGPLTLTGFYERDQIANPGQGAYLGTTRKDWMLLG AYDFGMVKPFLSYGEAKADNTSNKARTMQIGASIPAGPSGKVLVDWVKTEMTQTDIDRKTFTVGYDYFLSKRTDVYAMLM NDRITAQAKGNSFGVGIRHRF >Mature_341_residues MKKNLIALSAALLCAAGAHAQSSVQLTGLSDIYVGSMKMAGDADRRSVVNSGGLTTSWFGFKGTEDLGGGLKASFQLTSF LQVDTGTQGRFANDTFFSRDANVSLSGDFGSVLLGRWMAPNFLPSVVGNPLGDSFTFSPLILHMNVPLFNGTGWAATTPA DTGWSNQIVYSTPKIGGFSANIQYQFGEQAGNNGRKNVGANFFYFGGPLTLTGFYERDQIANPGQGAYLGTTRKDWMLLG AYDFGMVKPFLSYGEAKADNTSNKARTMQIGASIPAGPSGKVLVDWVKTEMTQTDIDRKTFTVGYDYFLSKRTDVYAMLM NDRITAQAKGNSFGVGIRHRF
Specific function: Forms anion selective channels [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To bacterial outer membrane proteins and porins [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001702 - InterPro: IPR002299 [H]
Pfam domain/function: PF00267 Porin_1 [H]
EC number: NA
Molecular weight: Translated: 36722; Mature: 36722
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLIALSAALLCAAGAHAQSSVQLTGLSDIYVGSMKMAGDADRRSVVNSGGLTTSWFG CCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECEEECCCCHHHHHHCCCCCEEEECC FKGTEDLGGGLKASFQLTSFLQVDTGTQGRFANDTFFSRDANVSLSGDFGSVLLGRWMAP CCCCHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHCCC NFLPSVVGNPLGDSFTFSPLILHMNVPLFNGTGWAATTPADTGWSNQIVYSTPKIGGFSA CCCHHHHCCCCCCCCCCCEEEEEEECEEECCCCCEECCCCCCCCCCEEEEECCCCCCEEE NIQYQFGEQAGNNGRKNVGANFFYFGGPLTLTGFYERDQIANPGQGAYLGTTRKDWMLLG EEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEECCCCCCEEEEE AYDFGMVKPFLSYGEAKADNTSNKARTMQIGASIPAGPSGKVLVDWVKTEMTQTDIDRKT ECCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEHHHHHHHCCCCEE FTVGYDYFLSKRTDVYAMLMNDRITAQAKGNSFGVGIRHRF EEEEHHHHHCCCCCEEEEEECCCEEEEECCCEEEEEEEECC >Mature Secondary Structure MKKNLIALSAALLCAAGAHAQSSVQLTGLSDIYVGSMKMAGDADRRSVVNSGGLTTSWFG CCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECEEECCCCHHHHHHCCCCCEEEECC FKGTEDLGGGLKASFQLTSFLQVDTGTQGRFANDTFFSRDANVSLSGDFGSVLLGRWMAP CCCCHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHCCC NFLPSVVGNPLGDSFTFSPLILHMNVPLFNGTGWAATTPADTGWSNQIVYSTPKIGGFSA CCCHHHHCCCCCCCCCCCEEEEEEECEEECCCCCEECCCCCCCCCCEEEEECCCCCCEEE NIQYQFGEQAGNNGRKNVGANFFYFGGPLTLTGFYERDQIANPGQGAYLGTTRKDWMLLG EEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEECCCCCCEEEEE AYDFGMVKPFLSYGEAKADNTSNKARTMQIGASIPAGPSGKVLVDWVKTEMTQTDIDRKT ECCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEHHHHHHHCCCCEE FTVGYDYFLSKRTDVYAMLMNDRITAQAKGNSFGVGIRHRF EEEEHHHHHCCCCCEEEEEECCCEEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1848840 [H]