Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is tse [H]
Identifier: 120609792
GI number: 120609792
Start: 1205763
End: 1207598
Strand: Reverse
Name: tse [H]
Synonym: Aave_1100
Alternate gene names: 120609792
Gene position: 1207598-1205763 (Counterclockwise)
Preceding gene: 120609793
Following gene: 120609791
Centisome position: 22.56
GC content: 70.86
Gene sequence:
>1836_bases ATGCTCCAGACACTGCGCTCCAAGATCCTTTTCATCAGCACCGCCACGGTCGTGTGCGCGCTGGCGGTCACCGGGGCCGC CACGTACACCATCACCCGGGCGAGCACGTTCGAGACCATCGAGCAGGACCTGAACGCGATCGCCGCCGGCAACGCCATGG CGGTGGACCAGTGGGTGGCCTCCAAGGGCACCGCCGTGGAGGCGACGGCGGCGGCCATCGAGCACGGCGACCCGCAGGGC TACGTGCCGCTGATGGGCAAGGCCAACGGCTTCCCCATCACCACCGTGGGCTGGGAAGACAAGACCTTCTTCTCCACCAC CAAGACCGCCCCGGGCTACGACCCCACGGCACGCCCCTGGTACAAGACCGCGGTGCAGGCCGGCAAGCTGGCCGTCACCA AGCCCTACGGCGACTCGACCACCGGCGTGCCCTACGTGGCGTTCGTGGCGCCGATGCTGCGCGCCGGCAAGCTCGAGGGT GTGCTGAGCGGCGCGGTGCCGCTCGACGGCGTGCGCGAGGTGGTTGCGGCCATCCGCCCCACGCCCGGCAGCTTCGGTTT CGTGGTCAACAGCGACGGGCAGGTCATCGCGCATGCCGACGCCAAGCTGGCGCTCAAGCCGGTCACCGAGATTTCCGCCG TGCTGACGCCGGCCACCATGGGGTCCATCGCCACGTCGGACAAGCCGCTCGAGGTCGAGATGGACGGCGCCGACAAGCTG CTCAAGGGCCGCCCCGTGCACGGCACGGACTGGACGCTCGTGGTGGCGCTGGACAAGGCCGAGGCCACGGCCGGCCTGCG CAGCGTGCTGCACACCCTGGCCGTCGCGATCGTGCTGCTGGCCCTGGCCGCGGCCGGCGTCGCCGCCCTGCTCACCGCCA CCTCCTTCCGCCGCCTCTCGCAGGTGCGCGACGCCATGGACCGCATCGGCTCCGGCGGCGGCGACCTGACCCAGCGCCTG CCCGTGTCCGGCCGCGACGAGGTCGCCCAGATCGCCTCCTCGTTCAATGCCTTCGTCGAACAGATCGGCACGGTGCTCAA GGATGTGCGCCACGGCGTGGAATCGATGAAGACGGCCACGGACGAGATCCGTGCCGGCAACCAGGACCTCTCCAACCGCA CCGAGGGCTCGGCGAGCGCGCTGCAGGAAACCTCCGCGTCGCTGTCGCAGCTCACCGTCACCCTGCAGCAGTCGGCCGAA TCCGCCGCGCAGGCCACGCGCCTGGCGAACTCGGCGAGCGCCTCCGCCCTCAAGGGCGGCGAGGTGGTGGCCAGCGCCGT CCACACCATGGACGACATCTCCAAGGCCTCGTCCAAGATCGGCGAGATCATCGGCGTGATCGACTCCATCGCATTCCAGA CCAACATCCTGGCGCTGAACGCGGCCGTGGAGGCCGCCCGCGCGGGCGAGCAGGGCCGCGGCTTCGCCGTCGTGGCCGGC GAGGTGCGCAGCCTGGCGCAGCGCAGCGCGGAGGCCGCCAAGGAAATCAAGTCGCTGATCGACGCCTCGGGCGCCAGCGT GCTCACCGGAACCGAGCGTGTGCGCGCGGCCGGCGAGACCATGGGCGAGATCGTGGACGGCATCCAGCGCGTCACGCAGA TCATCGGCGAGATCAACGGCTCCATGGCCGAGCAGAGCTCGGGCATCGCGCAGATCAACCAGGCCGTGGCCGAGATGGAC CGCGCCACGCAGCAGAACGCGGCGCTGGTGGAGGAATCCACCGCCGCCTCCGGCGTGCTCAACGACCAGGCGCACAACCT GTCGCGCACCGTGGCGGGCTTCACGCTCGACGAGCGCTCCGCGCCGGAGTCCCACGCACTGGCCCTGCCGCGCTGA
Upstream 100 bases:
>100_bases CTGCCGGGCCGCTTTTTTGCAACAGCAACGCGTTTTACGTAAAGAAAAGAAACCTTATGCGGTGTAATCAAGGCGCTTTC CCCGTCCGAAGGTTTCCCCC
Downstream 100 bases:
>100_bases GCGCGGACGGCCTCCCCCGACGGCACCGATGGGCATCAGCCAGAGCCAGATCGCACAGCAGGTCGTCGAATCCATCCTGG CGCAGAAGCTGGCGCCCGGC
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 611; Mature: 611
Protein sequence:
>611_residues MLQTLRSKILFISTATVVCALAVTGAATYTITRASTFETIEQDLNAIAAGNAMAVDQWVASKGTAVEATAAAIEHGDPQG YVPLMGKANGFPITTVGWEDKTFFSTTKTAPGYDPTARPWYKTAVQAGKLAVTKPYGDSTTGVPYVAFVAPMLRAGKLEG VLSGAVPLDGVREVVAAIRPTPGSFGFVVNSDGQVIAHADAKLALKPVTEISAVLTPATMGSIATSDKPLEVEMDGADKL LKGRPVHGTDWTLVVALDKAEATAGLRSVLHTLAVAIVLLALAAAGVAALLTATSFRRLSQVRDAMDRIGSGGGDLTQRL PVSGRDEVAQIASSFNAFVEQIGTVLKDVRHGVESMKTATDEIRAGNQDLSNRTEGSASALQETSASLSQLTVTLQQSAE SAAQATRLANSASASALKGGEVVASAVHTMDDISKASSKIGEIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAG EVRSLAQRSAEAAKEIKSLIDASGASVLTGTERVRAAGETMGEIVDGIQRVTQIIGEINGSMAEQSSGIAQINQAVAEMD RATQQNAALVEESTAASGVLNDQAHNLSRTVAGFTLDERSAPESHALALPR
Sequences:
>Translated_611_residues MLQTLRSKILFISTATVVCALAVTGAATYTITRASTFETIEQDLNAIAAGNAMAVDQWVASKGTAVEATAAAIEHGDPQG YVPLMGKANGFPITTVGWEDKTFFSTTKTAPGYDPTARPWYKTAVQAGKLAVTKPYGDSTTGVPYVAFVAPMLRAGKLEG VLSGAVPLDGVREVVAAIRPTPGSFGFVVNSDGQVIAHADAKLALKPVTEISAVLTPATMGSIATSDKPLEVEMDGADKL LKGRPVHGTDWTLVVALDKAEATAGLRSVLHTLAVAIVLLALAAAGVAALLTATSFRRLSQVRDAMDRIGSGGGDLTQRL PVSGRDEVAQIASSFNAFVEQIGTVLKDVRHGVESMKTATDEIRAGNQDLSNRTEGSASALQETSASLSQLTVTLQQSAE SAAQATRLANSASASALKGGEVVASAVHTMDDISKASSKIGEIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAG EVRSLAQRSAEAAKEIKSLIDASGASVLTGTERVRAAGETMGEIVDGIQRVTQIIGEINGSMAEQSSGIAQINQAVAEMD RATQQNAALVEESTAASGVLNDQAHNLSRTVAGFTLDERSAPESHALALPR >Mature_611_residues MLQTLRSKILFISTATVVCALAVTGAATYTITRASTFETIEQDLNAIAAGNAMAVDQWVASKGTAVEATAAAIEHGDPQG YVPLMGKANGFPITTVGWEDKTFFSTTKTAPGYDPTARPWYKTAVQAGKLAVTKPYGDSTTGVPYVAFVAPMLRAGKLEG VLSGAVPLDGVREVVAAIRPTPGSFGFVVNSDGQVIAHADAKLALKPVTEISAVLTPATMGSIATSDKPLEVEMDGADKL LKGRPVHGTDWTLVVALDKAEATAGLRSVLHTLAVAIVLLALAAAGVAALLTATSFRRLSQVRDAMDRIGSGGGDLTQRL PVSGRDEVAQIASSFNAFVEQIGTVLKDVRHGVESMKTATDEIRAGNQDLSNRTEGSASALQETSASLSQLTVTLQQSAE SAAQATRLANSASASALKGGEVVASAVHTMDDISKASSKIGEIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAG EVRSLAQRSAEAAKEIKSLIDASGASVLTGTERVRAAGETMGEIVDGIQRVTQIIGEINGSMAEQSSGIAQINQAVAEMD RATQQNAALVEESTAASGVLNDQAHNLSRTVAGFTLDERSAPESHALALPR
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI2367378, Length=297, Percent_Identity=53.8720538720539, Blast_Score=273, Evalue=3e-74, Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=55.9859154929578, Blast_Score=268, Evalue=9e-73, Organism=Escherichia coli, GI1788194, Length=296, Percent_Identity=51.3513513513513, Blast_Score=267, Evalue=2e-72, Organism=Escherichia coli, GI1787690, Length=323, Percent_Identity=48.9164086687306, Blast_Score=264, Evalue=1e-71, Organism=Escherichia coli, GI1789453, Length=324, Percent_Identity=39.1975308641975, Blast_Score=212, Evalue=7e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 63088; Mature: 63088
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQTLRSKILFISTATVVCALAVTGAATYTITRASTFETIEQDLNAIAAGNAMAVDQWVA CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH SKGTAVEATAAAIEHGDPQGYVPLMGKANGFPITTVGWEDKTFFSTTKTAPGYDPTARPW CCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCHH YKTAVQAGKLAVTKPYGDSTTGVPYVAFVAPMLRAGKLEGVLSGAVPLDGVREVVAAIRP HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCC TPGSFGFVVNSDGQVIAHADAKLALKPVTEISAVLTPATMGSIATSDKPLEVEMDGADKL CCCCCEEEECCCCCEEEECCCCEEECHHHHHHHHHCCHHHCCCCCCCCCEEEEECCHHHH LKGRPVHGTDWTLVVALDKAEATAGLRSVLHTLAVAIVLLALAAAGVAALLTATSFRRLS HCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVRDAMDRIGSGGGDLTQRLPVSGRDEVAQIASSFNAFVEQIGTVLKDVRHGVESMKTAT HHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DEIRAGNQDLSNRTEGSASALQETSASLSQLTVTLQQSAESAAQATRLANSASASALKGG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCH EVVASAVHTMDDISKASSKIGEIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCCEEEEHH EVRSLAQRSAEAAKEIKSLIDASGASVLTGTERVRAAGETMGEIVDGIQRVTQIIGEING HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SMAEQSSGIAQINQAVAEMDRATQQNAALVEESTAASGVLNDQAHNLSRTVAGFTLDERS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCC APESHALALPR CCCCCCCCCCC >Mature Secondary Structure MLQTLRSKILFISTATVVCALAVTGAATYTITRASTFETIEQDLNAIAAGNAMAVDQWVA CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH SKGTAVEATAAAIEHGDPQGYVPLMGKANGFPITTVGWEDKTFFSTTKTAPGYDPTARPW CCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCHH YKTAVQAGKLAVTKPYGDSTTGVPYVAFVAPMLRAGKLEGVLSGAVPLDGVREVVAAIRP HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCC TPGSFGFVVNSDGQVIAHADAKLALKPVTEISAVLTPATMGSIATSDKPLEVEMDGADKL CCCCCEEEECCCCCEEEECCCCEEECHHHHHHHHHCCHHHCCCCCCCCCEEEEECCHHHH LKGRPVHGTDWTLVVALDKAEATAGLRSVLHTLAVAIVLLALAAAGVAALLTATSFRRLS HCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVRDAMDRIGSGGGDLTQRLPVSGRDEVAQIASSFNAFVEQIGTVLKDVRHGVESMKTAT HHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DEIRAGNQDLSNRTEGSASALQETSASLSQLTVTLQQSAESAAQATRLANSASASALKGG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCH EVVASAVHTMDDISKASSKIGEIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCCEEEEHH EVRSLAQRSAEAAKEIKSLIDASGASVLTGTERVRAAGETMGEIVDGIQRVTQIIGEING HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SMAEQSSGIAQINQAVAEMDRATQQNAALVEESTAASGVLNDQAHNLSRTVAGFTLDERS HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCC APESHALALPR CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2496104 [H]