Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is dctA2 [H]

Identifier: 120609793

GI number: 120609793

Start: 1207700

End: 1208977

Strand: Reverse

Name: dctA2 [H]

Synonym: Aave_1101

Alternate gene names: 120609793

Gene position: 1208977-1207700 (Counterclockwise)

Preceding gene: 120609795

Following gene: 120609792

Centisome position: 22.59

GC content: 67.37

Gene sequence:

>1278_bases
ATGCATTTCCTTTTCCGCACCCTGTTCGGCCGTGTCGTGCTGGCCCTCGTGGCCGGCGTCGCCGTGGGGCTTCTGTGGCC
CCAGTGGGCCGTGCAGCTCAAACCCCTGGGCGACGGCTTCATCAAGCTCATCAAGATGCTGATCCCGCTGGTGGTGTTCT
GCGTCGTGGTGCACGGCATCGCCGGCACGGGGGACCTGAAGCGCGTGGGCCGCGTGGGCGTCAAGGCGCTGATCTACTTC
GAGGTGGTCACCACCATCGCGCTGGCGCTGGGCCTCGTTCTCGCCTTCGTGTTCGAGCCCGGCGTGGGCATGAACGTGGA
CCCGCGCGGGCTGGACGCCTCGGCGCTGAGTGCCTACACGGACAACGCCAGCAAGCTTTCGGGCGGCGGCTTCAGCGATT
TCGCGCTCAAGCTCATTCCCGCCACGGCGGTGAGCGCCTTCTCCAGCGGCGACGTGCTGCAGGTGCTGTTGTTCTCGATC
ATCTTCGGCTGCGCGCTGGCGCTGGTGGGCGAACGTGGCGCACGCGTGGCCGGGCTCATCGAGGATTTCTCGGTGGTGCT
GTTCCGCGCCATGGGCCTCATCATCCAGCTCGCGCCGCTCGGCGTGCTGGGCGCCATCGCCTTCACCGTGGGCAAGTACG
GCATCGGCTCGCTCAAGCAGCTCGGCATGCTGGTGGGGCTGTTCTACATCGCCGTGGCGCTGTTCGTGGTGGTCGTGCTC
GGGCTCATCATGCGCGTCTCGGGCTTCAGCCTGTTCAAGCTGCTGCGCTACCTGCGCGAAGAGCTGGCCGTGGTGTTCGC
CACCACCTCGTCCGACAGCGTGCTGCCGCAGATCATGGCCAAGCTCAAGCACATGGGCGTGCGCGACTCCACCGTGGGCC
TGGTGATCCCCACCGGCTACTCGTTCAACCTGGACGCGTTCTCCATCTACATCACGCTCGCGGCCGTGTTCATCGCCCAG
GCGACCAACACGCCGATCAGCATGGCCGACCTGCTGACCATCCTCGCGATCTCGCTCGTCACCTCCAAGGGCGCGCACGG
CGTGCCGGGCTCGGCCATCGTGGTGCTGGCCGCCACGCTGCACGCGATCCCGGCCATTCCGGCCATCGGCCTGGTACTGG
TGCTCTCGGTGGACTGGTTCATGGGCATCGCCCGCGCGCTGGGCAATCTCGTGGGCAATTGCGTAGCCACCGTGGCGATT
GCCGCGTGGGAAGGCGATATCGACCGGGAGCGCGCCCGGGCCGTGCTCGACGGCCAGGATGTGCCTCCCGTGGCCTGA

Upstream 100 bases:

>100_bases
AACCAGGGATTACCCGCATCCGGCCCGGCCATTTACTGTCTACATTTTTTGTATGCAAAATTGGCGCACAAGACATCGCG
CCCATCCTCGGGGGTTTTCC

Downstream 100 bases:

>100_bases
ACTGCCGGGCCGCTTTTTTGCAACAGCAACGCGTTTTACGTAAAGAAAAGAAACCTTATGCGGTGTAATCAAGGCGCTTT
CCCCGTCCGAAGGTTTCCCC

Product: C4-dicarboxylate transporter DctA

Products: orotate [Cytoplasm]; fumarate [Cytoplasm]; malate [Cytoplasm]; Na (I) [Cytoplasm]; succinate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MHFLFRTLFGRVVLALVAGVAVGLLWPQWAVQLKPLGDGFIKLIKMLIPLVVFCVVVHGIAGTGDLKRVGRVGVKALIYF
EVVTTIALALGLVLAFVFEPGVGMNVDPRGLDASALSAYTDNASKLSGGGFSDFALKLIPATAVSAFSSGDVLQVLLFSI
IFGCALALVGERGARVAGLIEDFSVVLFRAMGLIIQLAPLGVLGAIAFTVGKYGIGSLKQLGMLVGLFYIAVALFVVVVL
GLIMRVSGFSLFKLLRYLREELAVVFATTSSDSVLPQIMAKLKHMGVRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQ
ATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLHAIPAIPAIGLVLVLSVDWFMGIARALGNLVGNCVATVAI
AAWEGDIDRERARAVLDGQDVPPVA

Sequences:

>Translated_425_residues
MHFLFRTLFGRVVLALVAGVAVGLLWPQWAVQLKPLGDGFIKLIKMLIPLVVFCVVVHGIAGTGDLKRVGRVGVKALIYF
EVVTTIALALGLVLAFVFEPGVGMNVDPRGLDASALSAYTDNASKLSGGGFSDFALKLIPATAVSAFSSGDVLQVLLFSI
IFGCALALVGERGARVAGLIEDFSVVLFRAMGLIIQLAPLGVLGAIAFTVGKYGIGSLKQLGMLVGLFYIAVALFVVVVL
GLIMRVSGFSLFKLLRYLREELAVVFATTSSDSVLPQIMAKLKHMGVRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQ
ATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLHAIPAIPAIGLVLVLSVDWFMGIARALGNLVGNCVATVAI
AAWEGDIDRERARAVLDGQDVPPVA
>Mature_425_residues
MHFLFRTLFGRVVLALVAGVAVGLLWPQWAVQLKPLGDGFIKLIKMLIPLVVFCVVVHGIAGTGDLKRVGRVGVKALIYF
EVVTTIALALGLVLAFVFEPGVGMNVDPRGLDASALSAYTDNASKLSGGGFSDFALKLIPATAVSAFSSGDVLQVLLFSI
IFGCALALVGERGARVAGLIEDFSVVLFRAMGLIIQLAPLGVLGAIAFTVGKYGIGSLKQLGMLVGLFYIAVALFVVVVL
GLIMRVSGFSLFKLLRYLREELAVVFATTSSDSVLPQIMAKLKHMGVRDSTVGLVIPTGYSFNLDAFSIYITLAAVFIAQ
ATNTPISMADLLTILAISLVTSKGAHGVPGSAIVVLAATLHAIPAIPAIGLVLVLSVDWFMGIARALGNLVGNCVATVAI
AAWEGDIDRERARAVLDGQDVPPVA

Specific function: Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane [H]

COG id: COG1301

COG function: function code C; Na+/H+-dicarboxylate symporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI21314632, Length=400, Percent_Identity=28.5, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI66773030, Length=375, Percent_Identity=24, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI5032093, Length=404, Percent_Identity=27.2277227722772, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI169790839, Length=457, Percent_Identity=22.5382932166302, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4827012, Length=307, Percent_Identity=25.7328990228013, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI194239697, Length=485, Percent_Identity=21.8556701030928, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI223468566, Length=273, Percent_Identity=26.7399267399267, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI223468564, Length=273, Percent_Identity=26.7399267399267, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI40254478, Length=414, Percent_Identity=24.3961352657005, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI301601644, Length=160, Percent_Identity=30, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1789947, Length=416, Percent_Identity=51.6826923076923, Blast_Score=428, Evalue=1e-121,
Organism=Escherichia coli, GI1790514, Length=385, Percent_Identity=40.7792207792208, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI1788024, Length=415, Percent_Identity=22.8915662650602, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17537407, Length=419, Percent_Identity=25.5369928400955, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193206654, Length=424, Percent_Identity=23.1132075471698, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71996953, Length=463, Percent_Identity=25.2699784017279, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI193206505, Length=424, Percent_Identity=23.8207547169811, Blast_Score=88, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17541374, Length=408, Percent_Identity=22.3039215686275, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983106, Length=443, Percent_Identity=22.1218961625282, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71983099, Length=443, Percent_Identity=22.1218961625282, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24583025, Length=398, Percent_Identity=24.3718592964824, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17137668, Length=398, Percent_Identity=24.3718592964824, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24583023, Length=398, Percent_Identity=24.3718592964824, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281360483, Length=451, Percent_Identity=25.7206208425721, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17137666, Length=451, Percent_Identity=25.7206208425721, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281360481, Length=451, Percent_Identity=25.7206208425721, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991
- InterPro:   IPR018107 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 44476; Mature: 44476

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00714 NA_DICARBOXYL_SYMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: orotate [Periplasm]; fumarate [Periplasm]; malate [Periplasm]; Na (I) [Periplasm]; succinate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + orotate [Periplasm] = Na (I) [Cytoplasm] + orotate [Cytoplasm] Na (I) [Periplasm] + fumarate [Periplasm] = Na (I) [Cytoplasm] + fumarate [Cytoplasm] Na (I) [Periplasm] + malate [Periplasm] = Na (I) [Cytoplasm] + malate [Cytoplasm] Na

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]