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The map label for this gene is ydhC [H]

Identifier: 120609791

GI number: 120609791

Start: 1205039

End: 1205734

Strand: Reverse

Name: ydhC [H]

Synonym: Aave_1099

Alternate gene names: 120609791

Gene position: 1205734-1205039 (Counterclockwise)

Preceding gene: 120609792

Following gene: 120609790

Centisome position: 22.53

GC content: 73.42

Gene sequence:

>696_bases
ATGGGCATCAGCCAGAGCCAGATCGCACAGCAGGTCGTCGAATCCATCCTGGCGCAGAAGCTGGCGCCCGGCGAACGGCT
GGGCGAGCAGGACCTGGCCGACCTGTTCGGCGTCAGCCGCACCATGGTGCGGGAAGCGCTGATGCAACTGCAGGCCCGCG
GTTTCGTCGAGGTGCGCGCGCGGCGCGGCTGGTACGTGGTGGAGCCGTCGGTGGAGGATGCGCGCGACGCCTTCTCCGCG
CGCCGCATCATCGAATCCGGCATCCTGGCCGACGCCGGCCGGCCGCTGCAGCAGACCGTGGTGCCGCGCCTGCGCGCGCA
CATCGACGAGGAGCGGCGCGCGATCGAAGGCGCGGATGCCGCGACGCGCGCCTTCCTGCTGGCCGATTTCCACGTCTGCC
TGGCCGAGGCGCTGGGCCACCGCACGCTCAGCGACCTGCTGCGCGACCTCACGGCCCGCACCACGCTGGCCGCGTCGCTC
TACCAGTCGCAGCACGGCGCCAGCCAGTCCTGCGCGGAACACGCGGCCATCGTCGAGGCACTGGAATCCGGCGACACCGC
CCTGGCCCGGGAGCGCATGCTGGCGCACATCGGCCACGTGGAGGACGCGCTCGACCCGGACCAGCCCCTGGTGCGCGACC
GGCTGCGCGAATCGCTCGCCCCCCTGTCCGCGGCGGCCCGGCCCGCGGCGGACTGA

Upstream 100 bases:

>100_bases
CGCACCGTGGCGGGCTTCACGCTCGACGAGCGCTCCGCGCCGGAGTCCCACGCACTGGCCCTGCCGCGCTGAGCGCGGAC
GGCCTCCCCCGACGGCACCG

Downstream 100 bases:

>100_bases
ACGCCCCGCCTGTCTCCTGCACCTTGCACCGCCCGTTGGCAAGCGGGTAAGCACCGAGCCGCACGGGCGCTCCTGGCCTT
TGAATGCATCCATTTTTTGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSA
RRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASL
YQSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD

Sequences:

>Translated_231_residues
MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSA
RRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASL
YQSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD
>Mature_230_residues
GISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSAR
RIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLY
QSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD

Specific function: Repressor For The Uxurba Operon. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=215, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25143; Mature: 25012

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRA
CCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RRGWYVVEPSVEDARDAFSARRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADA
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
ATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLYQSQHGASQSCAEHAAIVEA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD
HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRA
CCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RRGWYVVEPSVEDARDAFSARRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADA
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
ATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLYQSQHGASQSCAEHAAIVEA
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD
HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]