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The map label for this gene is ureD

Identifier: 120609774

GI number: 120609774

Start: 1186165

End: 1186995

Strand: Reverse

Name: ureD

Synonym: Aave_1082

Alternate gene names: 120609774

Gene position: 1186995-1186165 (Counterclockwise)

Preceding gene: 120609775

Following gene: 120609773

Centisome position: 22.18

GC content: 74.13

Gene sequence:

>831_bases
ATGACCTGGCACGCCCGCCTGCAACTGGACTACCGGCGGGAAGGCCCGCGCACCGTGGCCGGCTTCCTCCACGACGGCCC
GCTGCGCATCCTGCAGAGCCTCTACCCCGAGGGCGGCGGCATCTGCCACAACGTGCTCGTGCATCCACCGGGCGGACTGG
TGGGCGGGGACACGCTGGACATCGCGGCCACGGTCGCGCCGGGAGCCCACGGCCTCGTGACCACGCCGGGCGCCACGCGC
TTCTACCGCTCCACCGGCGCTCCCGCGCTACAGCGCACGCAGGCGACGCTGGCCGCCGGCGCACGCCTCGAATGGCTGCC
GCTGGAGGCGCTGTGCTACAGCGCCTGCCAGGCCGAGAACCGGCTCACCCTCTCGCTCTCGCCGGGCGCCGAATGCATCG
CCTGGGACGTGACGGCGCTGGGCCTGCCGCACTCCGGCCAGCCCTTCGCCACGGGTCGCTTCACGCAGCACATCGAGGTG
CCCGGCATCTGGCTGGAACGCGGCACCATCGATGCCGCCGACGGGCTGCTGATGGACGGCCGCCTCGGGCTGGCCGGGCA
CCGCTGCCTGGCGTCGGTGTTTTTCGTGGCCGGCGAGGCCCTGCCGCGGGAACGCCGGGAGGCGGCTTTGGACGCGGCCC
GCGCCGTGATCGATGCCCATGCACTGCGGGAGACCGCGGGCGCGACCAGTCCGCACCCCCAGGTGGTGGTGGTGCGCGTG
CTGGCGCCCGTGGTGGAGCCGGCCATGGAGCTGCTGCGACGGGCATGGGGCGCCTGGCGCGAACACCTCTGGGGCCTGCA
GCCACGCCAGCCGCGCATCTGGGCCATGTGA

Upstream 100 bases:

>100_bases
TGACGCAGGTGTCCGCCGTCCGGCCCCGGGGCTCTGCGGGCCGCGGCTATCATGCGGCGCTCGCTCCAACCCACCAACGA
CCGCAAGGCACCCACGACCG

Downstream 100 bases:

>100_bases
AACGCGGCAGCGACGGTGGAATGACCGGAAAAGCCGGAATCGGCAGAAACACTTGCGAATAACGCTGCACTATCGGTCAT
AGTTGCCGATAACGGATCAG

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATR
FYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEV
PGIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV
LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM

Sequences:

>Translated_276_residues
MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATR
FYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEV
PGIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV
LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM
>Mature_275_residues
TWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLDIAATVAPGAHGLVTTPGATRF
YRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAENRLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVP
GIWLERGTIDAADGLLMDGRLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRVL
APVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_ACIAC (A1TL40)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_969452.1
- STRING:   A1TL40
- GeneID:   4666194
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_1082
- NMPDR:   fig|397945.5.peg.938
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   RFYRSTG
- ProtClustDB:   CLSK722439
- BioCyc:   AAVE397945:AAVE_1082-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 29713; Mature: 29582

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLD
CCEEEEEEEEECCCCCCEEEHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEE
IAATVAPGAHGLVTTPGATRFYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAEN
EEEEECCCCCCEEECCCCHHHHHCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC
RLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVPGIWLERGTIDAADGLLMDG
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECC
RLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH
LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TWHARLQLDYRREGPRTVAGFLHDGPLRILQSLYPEGGGICHNVLVHPPGGLVGGDTLD
CEEEEEEEEECCCCCCEEEHHHCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEE
IAATVAPGAHGLVTTPGATRFYRSTGAPALQRTQATLAAGARLEWLPLEALCYSACQAEN
EEEEECCCCCCEEECCCCHHHHHCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCC
RLTLSLSPGAECIAWDVTALGLPHSGQPFATGRFTQHIEVPGIWLERGTIDAADGLLMDG
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECC
RLGLAGHRCLASVFFVAGEALPRERREAALDAARAVIDAHALRETAGATSPHPQVVVVRV
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHH
LAPVVEPAMELLRRAWGAWREHLWGLQPRQPRIWAM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA