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The map label for this gene is pelC [H]

Identifier: 120609591

GI number: 120609591

Start: 974426

End: 975511

Strand: Reverse

Name: pelC [H]

Synonym: Aave_0897

Alternate gene names: 120609591

Gene position: 975511-974426 (Counterclockwise)

Preceding gene: 120609592

Following gene: 120609586

Centisome position: 18.22

GC content: 70.26

Gene sequence:

>1086_bases
ATGCGACGCCGTGCATCGGGCATGGCGTACCGGCGCTTCGGCGCCGCACTTTTCGCGAGATCCATGAACCCCATCGCCTT
TCTCTCGTCTTCCCTGACCGCACGGCATGCCGCGGCATCGGACCAGGCCGCCTCCGCGGCCCGGCACAACGGCAGCCAGG
CACTGCAGCAATCCCTCGCCACCCTGCTCGAAGGCCTCCTGAAGCGCATGCGCGGCGGAGCCGCCCCGTCACCCCGCTCT
GGCGGAAGCGCCGCGGGGCATGCCGCCGGGACGGCGCCTCCGGCCTCGCACACCACGCAACGTGCCGTGGCGCACACCGA
TGCCGGCCGCGCCGGCACGGCGCACGCAGCGCGCGGCACGGCCACCACGGCCCATGCCGCGAAGCCTCCCGCCAACATGC
GGGTCGGCGCGCCGACGGGCACGGTGGAGGTGAACAAACCCATCGTCGTGAAGGCCGGCCAGACCTTCGACGGCCAGGGC
CGGCTCTTCAGCGCCGGGCCCGGGCTCAACGGCGGCGGCACGGCGGAGACGCATCTGCCGGTCTTCATCCTGGAGCCGGG
CGCGTCCGTGAAGAACCTGCAGTTCAAGGGCGGCGACGGCATCCACCTGCTGGGCGACGCCAGGCTCGACAACGTGCACG
GCCTGCAGACGGACGACGACTTCATCACCGTCGATGGCGCGGAGAACCGGGCCGTGGATGCGCAGCGCGCCGGCTATTCC
GCCAAGAGCATCCCTCCGGGCCCGGCCCACGTGGAGATCACGAACTCGTCGTTCCAGAACAGCCACGACAAGGCGATCCA
GATCAACGGCGACGTGGACCTGAAGCTGCGCGGCATCTATGCGAACCAGATCGGGCAACTGGCCGTCACGCGCGGCGGCT
ACCCGATCACCGCGCATGTGGACATCGCCGACTCCACCGCGCAGAACCTGAAATCCTTCCTCTTCCGCTTCGACTCCCGG
CAGTCCACCGTGCGCATCGCCAACACCGACGTGGACGGAGGCCGCACGCCGGTGAACGTGATGGCCGGCAACCCCGCCAA
CGTGCACGGCACGCGCAGCGTGCGCCAGTCGATCCAGACGGTCTGA

Upstream 100 bases:

>100_bases
CTGACCCGGGCCGGACCCGGGCGCGCCGGGGCACGCTTCGGCTGCATGGCCGCCGCTTCGCGTGGCGGCAGCGGCGTGCC
GGTTCCGGAGCGCAGAGTGG

Downstream 100 bases:

>100_bases
CTCCGGACCGCCTGGCATCTGCGCGGCCAACACGACCCAGCGAAGCGGTTCTGGCCAGGCGCAGTATCGCAGGCAGTACG
AGTAGTACGACAAGATGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Pectin lyase [H]

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRRRASGMAYRRFGAALFARSMNPIAFLSSSLTARHAAASDQAASAARHNGSQALQQSLATLLEGLLKRMRGGAAPSPRS
GGSAAGHAAGTAPPASHTTQRAVAHTDAGRAGTAHAARGTATTAHAAKPPANMRVGAPTGTVEVNKPIVVKAGQTFDGQG
RLFSAGPGLNGGGTAETHLPVFILEPGASVKNLQFKGGDGIHLLGDARLDNVHGLQTDDDFITVDGAENRAVDAQRAGYS
AKSIPPGPAHVEITNSSFQNSHDKAIQINGDVDLKLRGIYANQIGQLAVTRGGYPITAHVDIADSTAQNLKSFLFRFDSR
QSTVRIANTDVDGGRTPVNVMAGNPANVHGTRSVRQSIQTV

Sequences:

>Translated_361_residues
MRRRASGMAYRRFGAALFARSMNPIAFLSSSLTARHAAASDQAASAARHNGSQALQQSLATLLEGLLKRMRGGAAPSPRS
GGSAAGHAAGTAPPASHTTQRAVAHTDAGRAGTAHAARGTATTAHAAKPPANMRVGAPTGTVEVNKPIVVKAGQTFDGQG
RLFSAGPGLNGGGTAETHLPVFILEPGASVKNLQFKGGDGIHLLGDARLDNVHGLQTDDDFITVDGAENRAVDAQRAGYS
AKSIPPGPAHVEITNSSFQNSHDKAIQINGDVDLKLRGIYANQIGQLAVTRGGYPITAHVDIADSTAQNLKSFLFRFDSR
QSTVRIANTDVDGGRTPVNVMAGNPANVHGTRSVRQSIQTV
>Mature_361_residues
MRRRASGMAYRRFGAALFARSMNPIAFLSSSLTARHAAASDQAASAARHNGSQALQQSLATLLEGLLKRMRGGAAPSPRS
GGSAAGHAAGTAPPASHTTQRAVAHTDAGRAGTAHAARGTATTAHAAKPPANMRVGAPTGTVEVNKPIVVKAGQTFDGQG
RLFSAGPGLNGGGTAETHLPVFILEPGASVKNLQFKGGDGIHLLGDARLDNVHGLQTDDDFITVDGAENRAVDAQRAGYS
AKSIPPGPAHVEITNSSFQNSHDKAIQINGDVDLKLRGIYANQIGQLAVTRGGYPITAHVDIADSTAQNLKSFLFRFDSR
QSTVRIANTDVDGGRTPVNVMAGNPANVHGTRSVRQSIQTV

Specific function: Catalyzes the depolymerization of both polygalacturonate and pectins of methyl esterification degree from 22 to 89%, with an endo mode of action. In contrast to the majority of pectate lyases, displays high activity on highly methylated pectins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004898
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF03211 Pectate_lyase [H]

EC number: =4.2.2.2; =4.2.2.10 [H]

Molecular weight: Translated: 37363; Mature: 37363

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRASGMAYRRFGAALFARSMNPIAFLSSSLTARHAAASDQAASAARHNGSQALQQSLA
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
TLLEGLLKRMRGGAAPSPRSGGSAAGHAAGTAPPASHTTQRAVAHTDAGRAGTAHAARGT
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
ATTAHAAKPPANMRVGAPTGTVEVNKPIVVKAGQTFDGQGRLFSAGPGLNGGGTAETHLP
CCCCCCCCCCCCEEECCCCCEEEECCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCE
VFILEPGASVKNLQFKGGDGIHLLGDARLDNVHGLQTDDDFITVDGAENRAVDAQRAGYS
EEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCC
AKSIPPGPAHVEITNSSFQNSHDKAIQINGDVDLKLRGIYANQIGQLAVTRGGYPITAHV
CCCCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEEEEEECCCCCEEEEECCCEEEEEEE
DIADSTAQNLKSFLFRFDSRQSTVRIANTDVDGGRTPVNVMAGNPANVHGTRSVRQSIQT
ECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC
V
C
>Mature Secondary Structure
MRRRASGMAYRRFGAALFARSMNPIAFLSSSLTARHAAASDQAASAARHNGSQALQQSLA
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
TLLEGLLKRMRGGAAPSPRSGGSAAGHAAGTAPPASHTTQRAVAHTDAGRAGTAHAARGT
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
ATTAHAAKPPANMRVGAPTGTVEVNKPIVVKAGQTFDGQGRLFSAGPGLNGGGTAETHLP
CCCCCCCCCCCCEEECCCCCEEEECCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCE
VFILEPGASVKNLQFKGGDGIHLLGDARLDNVHGLQTDDDFITVDGAENRAVDAQRAGYS
EEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCC
AKSIPPGPAHVEITNSSFQNSHDKAIQINGDVDLKLRGIYANQIGQLAVTRGGYPITAHV
CCCCCCCCCEEEEECCCCCCCCCCEEEECCCEEEEEEEEECCCCCEEEEECCCEEEEEEE
DIADSTAQNLKSFLFRFDSRQSTVRIANTDVDGGRTPVNVMAGNPANVHGTRSVRQSIQT
ECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA