Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is recG [H]
Identifier: 120609293
GI number: 120609293
Start: 649080
End: 651206
Strand: Direct
Name: recG [H]
Synonym: Aave_0593
Alternate gene names: 120609293
Gene position: 649080-651206 (Clockwise)
Preceding gene: 120609289
Following gene: 120609294
Centisome position: 12.13
GC content: 72.31
Gene sequence:
>2127_bases ATGCCCGCTCCCGCGCCCAGTCCCGCCCAGAAAGCCCTCCAGAAGCTGGGACTGTCGCGCGACATCGACCTCGCGCTGCA CCTGCCCCTGCGCTACGAGGACGAAACCCGCATCACCCCCCTGCGCAACGTGCGGGATGGCGACACGGCCCAGATCGAGG CCACGGTCACGGCGAGCGAAGTGCAGTTGCGCCCGCGCCGCCAGCTGGTGGTGACGGTGGACGACGGCACGGGTACCTGC GAGCTGCGCTTCTTCAGTTTCTATCCTTCCCACCAGAAGACCCTGGCCGTCGGAGCGCGCCTGCGCATCCGCGGTGAGGT CAAGGGGGGCTTCTGGGGGCGGCAGATGCTGCATCCGGCGTTCCGGCTGGCGGGCGGCGAACTGCCCGCCGCCCTCACGC CGGTCTATCCGACCACGGCCGGCCTGCCCCAGCCCTATCTGCGCCGGGCCATCGTGAGCGCCCTGCAGCGCGTAGACCTG TCCGAAACCATCCCCCCGGGGCTGGAACCTCCGATCCCGCGGTTCCTGGGCGAGGGCGGCGGGGGCCGCTCCTGGTGGAC GCTGCGCGACGCGCTGGTGTTCCTGCACCATCCCACACCCGACGTGGCCTTGGCCACGCTGGAGGACCACAGCCATCCTG CCTGGCAGCGGCTGAAGGCCGAGGAACTGCTCGCGCAGCAGCTCTCGCAGCTGGAGGCCAAGCGCGAGCGCGACCGGCTG CGCGCGCCGGTGCTGCGGCCCGCGCCGGGCGGGGAGGGGGGAGCCGCGCTGCACGAACGCCTGCTGGCCGCATTGCCCTT CGGCCTGACCGCCGCCCAGCGGCGCGTGTGCGCCGAGATCGCGGCAGACCTCGCCCGCGCCGTGCCCATGCACCGGCTCC TGCAGGGCGACGTGGGCTCGGGCAAGACCGTGGTGGCTGCGCTCTCGGCGGCCGTGTGCATGGATGCGGGCTGGCAGTGC GCGCTCATGGCGCCCACCGAGATCCTGGCCGAACAGCACTTCCGCAAGCTCATCGGCTGGCTGGAGCCCCTGCTCGCGGC CAGTGGACGGCGCGTGGCCTGGCTGGCTGGCGGCCAGAAGAAGAAGGAGCGCGCCGCCATGCTGGCGCTGGTGGAAAGCG GCGAGGCGGCGCTGGTCGTGGGCACCCACGCGGTGATCCAGGAGCAGGTGCGCTTCCGCAACCTCGCGCTGGCCGTCATC GACGAGCAGCACCGCTTCGGCGTGGCGCAGCGGCTCGCGCTGCGCCGCAAGCTCGCCGACCAGGGCATGGAGCCGCACCT GCTGATGATGAGCGCCACGCCGATCCCGCGCACGCTCGCCATGAGCTACTACGCCGACCTCGACGTCTCCACCATCGACG AGCTGCCCCCCGGCCGCACGCCCATCGTCACCAAACTGATCGCCGACAGCCGCAAGGACGAGGTCATCGAGCGCATCGGC GCGCAGGTGGCGTCCGGCCGGCAGGTGTACTGGGTCTGCCCGCTCATCGAGGAGAGTGAGGCGCTGGACCTCTCCAACGC CACCGCCACGCACCTGGAACTCAGCGAGGCCCTGCAGGGCGATCCGGCGCACGGGCAGGCGCCGGTCATGGTGGGCCTGC TGCACTCCCGCATGCCCCCGGCCGAGAAGAAGGCCGTCATGGAACTGTTCACCGCCGGCACCATGGGCGTGCTCGTCTCC ACCACGGTGATCGAGGTGGGCGTGGACGTGCCCAACGCATCGCTCATGGTGATCGAGCATGCCGAGCGGTTCGGCCTCTC GCAGCTGCACCAGCTGCGCGGCCGCGTGGGCCGCGGGTCGGCGGCGTCGGCCTGCGTGCTGCTCTATTCGACGGGCGAGA GCGGCCGGCTGGGCGAGACCGCGCGCGACCGCCTGCGGGCCATGGCGGAAACCCAGGATGGCTTCGAGATCGCGCGGCGC GACCTGGAAATCCGCGGCCCCGGCGAATTCCTCGGCGCCCGCCAGTCCGGCGCGCCGATGCTGCGCTTCGCGGACCTCGC CACCGACACCCTGCTGCTGGAGTGGGCGCGCGAGACGGCCCCGCGCATGCTCGACGGGCATCCCGGCGACGCGCGCCGCC ATGTGGGCCGCTGGCTCGGCGGCAAGGCCGATTACCTCAAGGCCTGA
Upstream 100 bases:
>100_bases TGGAGCGTGCGGCAAGCCGTTTCCATTTTTGCAGTTATTGCGGATTTTGCCATTTCTGCGCGGCAAGCACTGTTTCCTCC GCTCTCCCGTCGTTTCGCCC
Downstream 100 bases:
>100_bases TCCGGCGGTCCTGCATCCGTGGCAGACTTGGCGGCCCGTCGCCACGGTCCGCATTCCGTGTCGCGGGCGCACAATCGCAC CTTCCGCATTGCCGACCCTT
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 708; Mature: 707
Protein sequence:
>708_residues MPAPAPSPAQKALQKLGLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTASEVQLRPRRQLVVTVDDGTGTC ELRFFSFYPSHQKTLAVGARLRIRGEVKGGFWGRQMLHPAFRLAGGELPAALTPVYPTTAGLPQPYLRRAIVSALQRVDL SETIPPGLEPPIPRFLGEGGGGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRL RAPVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGSGKTVVAALSAAVCMDAGWQC ALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVI DEQHRFGVAQRLALRRKLADQGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIG AQVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPPAEKKAVMELFTAGTMGVLVS TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARR DLEIRGPGEFLGARQSGAPMLRFADLATDTLLLEWARETAPRMLDGHPGDARRHVGRWLGGKADYLKA
Sequences:
>Translated_708_residues MPAPAPSPAQKALQKLGLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTASEVQLRPRRQLVVTVDDGTGTC ELRFFSFYPSHQKTLAVGARLRIRGEVKGGFWGRQMLHPAFRLAGGELPAALTPVYPTTAGLPQPYLRRAIVSALQRVDL SETIPPGLEPPIPRFLGEGGGGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRL RAPVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGSGKTVVAALSAAVCMDAGWQC ALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVI DEQHRFGVAQRLALRRKLADQGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIG AQVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPPAEKKAVMELFTAGTMGVLVS TTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARR DLEIRGPGEFLGARQSGAPMLRFADLATDTLLLEWARETAPRMLDGHPGDARRHVGRWLGGKADYLKA >Mature_707_residues PAPAPSPAQKALQKLGLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTASEVQLRPRRQLVVTVDDGTGTCE LRFFSFYPSHQKTLAVGARLRIRGEVKGGFWGRQMLHPAFRLAGGELPAALTPVYPTTAGLPQPYLRRAIVSALQRVDLS ETIPPGLEPPIPRFLGEGGGGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRLR APVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGSGKTVVAALSAAVCMDAGWQCA LMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQKKKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVID EQHRFGVAQRLALRRKLADQGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIGA QVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPPAEKKAVMELFTAGTMGVLVST TVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARRD LEIRGPGEFLGARQSGAPMLRFADLATDTLLLEWARETAPRMLDGHPGDARRHVGRWLGGKADYLKA
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=706, Percent_Identity=48.1586402266289, Blast_Score=578, Evalue=1e-166, Organism=Escherichia coli, GI1787357, Length=417, Percent_Identity=35.2517985611511, Blast_Score=216, Evalue=6e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 76998; Mature: 76867
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPAPSPAQKALQKLGLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTASE CCCCCCCHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEHHH VQLRPRRQLVVTVDDGTGTCELRFFSFYPSHQKTLAVGARLRIRGEVKGGFWGRQMLHPA HEECCCEEEEEEEECCCCEEEEEEEEECCCCCCEEEECEEEEEEEECCCCCCHHHHHHHH FRLAGGELPAALTPVYPTTAGLPQPYLRRAIVSALQRVDLSETIPPGLEPPIPRFLGEGG HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHCCCC GGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRL CCCCHHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAPVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGS CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GKTVVAALSAAVCMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQK CHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC KKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRRKLAD HHHHHHHHHHEECCCEEEEECHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHH QGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIG CCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHH AQVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPP HHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC AEKKAVMELFTAGTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGS HHHHHHHHHHHCCHHHHHHHHHHEEEECCCCCCCEEEEECHHHCCHHHHHHHHCCCCCCC AASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPM CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEECCCHHHHCCCCCCCCC LRFADLATDTLLLEWARETAPRMLDGHPGDARRHVGRWLGGKADYLKA EEHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCHHCCC >Mature Secondary Structure PAPAPSPAQKALQKLGLSRDIDLALHLPLRYEDETRITPLRNVRDGDTAQIEATVTASE CCCCCCHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEHHH VQLRPRRQLVVTVDDGTGTCELRFFSFYPSHQKTLAVGARLRIRGEVKGGFWGRQMLHPA HEECCCEEEEEEEECCCCEEEEEEEEECCCCCCEEEECEEEEEEEECCCCCCHHHHHHHH FRLAGGELPAALTPVYPTTAGLPQPYLRRAIVSALQRVDLSETIPPGLEPPIPRFLGEGG HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHCCCC GGRSWWTLRDALVFLHHPTPDVALATLEDHSHPAWQRLKAEELLAQQLSQLEAKRERDRL CCCCHHHHHHEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RAPVLRPAPGGEGGAALHERLLAALPFGLTAAQRRVCAEIAADLARAVPMHRLLQGDVGS CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GKTVVAALSAAVCMDAGWQCALMAPTEILAEQHFRKLIGWLEPLLAASGRRVAWLAGGQK CHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC KKERAAMLALVESGEAALVVGTHAVIQEQVRFRNLALAVIDEQHRFGVAQRLALRRKLAD HHHHHHHHHHEECCCEEEEECHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHH QGMEPHLLMMSATPIPRTLAMSYYADLDVSTIDELPPGRTPIVTKLIADSRKDEVIERIG CCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHH AQVASGRQVYWVCPLIEESEALDLSNATATHLELSEALQGDPAHGQAPVMVGLLHSRMPP HHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC AEKKAVMELFTAGTMGVLVSTTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGS HHHHHHHHHHHCCHHHHHHHHHHEEEECCCCCCCEEEEECHHHCCHHHHHHHHCCCCCCC AASACVLLYSTGESGRLGETARDRLRAMAETQDGFEIARRDLEIRGPGEFLGARQSGAPM CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEECCCHHHHCCCCCCCCC LRFADLATDTLLLEWARETAPRMLDGHPGDARRHVGRWLGGKADYLKA EEHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]