Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
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Accession | NC_008750 |
Length | 4,708,380 |
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The map label for this gene is 120597418
Identifier: 120597418
GI number: 120597418
Start: 644216
End: 645322
Strand: Direct
Name: 120597418
Synonym: Sputw3181_0587
Alternate gene names: NA
Gene position: 644216-645322 (Clockwise)
Preceding gene: 120597417
Following gene: 120597421
Centisome position: 13.68
GC content: 38.03
Gene sequence:
>1107_bases ATGACAAGTAGGCAAAGTCAGAAAGGTGGTGATAGTTCCACTAATATTCAAGCTGAACAGCTTGTAGTCAATATGGGAAT TGATGAGAAGCGTGCTCGTGAAATTTATCAAGAGATGAATTTGCAACTAAAAAAGGAATACACTCACGAAGCCCTAAACA TTGCGATTTCGAGGGTAGAAGAATTTGAAAATAGCTTAATGCTTAAAATGAATTCAGTTGAAGGCGCAATGCAAGCTTTC GCAGATCCCAGCTTCCAATTGCTACTTGTTGATGCCCAGAAAGCTGCCGCCGCAACAGAGAGAGCTGCAGATTACGACTT GCTATCTGAACTACTAGTTCACAGATTTAAGAAAGGTGAAAATCGCACTATACGTGCTGGAATTACTCGTGCAGTTGAAA TTGTGGATGAAATCTCGGATGAAGCTTTGCTAGGTTTAACTGTTGCTCATTCTGTTACAACATTTGTTCCAGCTACAGGT GATATTAATATTGGCTTAGATATGCTCGATGGCCTGTTTGGTAAAATCCTTTACAATAAATTACCGAACGGCAATGAGTG GCTAGATCACTTAGATGTTCTTAATGCTGTTCGGGTAAATTCATTTGGTAGTTTGAAAAAAATGAAGCAATATTATCCTG AATCACTGTCAGTCTATGTAGACGTTGGTATCAAGAAAAATTCAGATAGTTACTCTCAAGCACTTGAAATACTGCGAATC AACAATTTGCCACATGATCTGCTGATTGAACATAGCTTAAGTGATGAGTTTGTAAGGCTGCCTTTTAGTGATAAGTCGCG AATTCAAGATACTATTTTGATTCAAAAACTTGTTTATAATGGCCTTACTCATACTGTTCCTGTGGCTTTATCTCCTGTTC AGTTGCAAGCGATAACTGATGTGTATGATCTCTATCTAAACGATGCACAAATAAAGCAACAAAATATCAACTCTTTTATG GAACAGTGGGAAAAGAGAGAAAATTTGAGACTGTTGCGCTCTTGGTGGGACTCTATAAATACTTCATTCCAATTAACTTC AGTAGGAAAGGTTTTAGCCCATTCTAATGCACAAAGGTGTGACAATCAGTTACCCCCGCTTAATTAA
Upstream 100 bases:
>100_bases TGGTTTTTTGTATCGAAGAATAATAAGCAAGTTCAAAAAGGTGGTAAGAACTCGACAAACATCCAGGTAGGAGGCAATTT TCACATAGGGAACGATAAAA
Downstream 100 bases:
>100_bases TACCTAGAAATATGGATATCCAAACTCAATAGTGCTTCTGATGCATTACTGCCATTCTTATTCACTTTTGCTCCATTAAC TATAGCGAGCACTGGTTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAF ADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATG DINIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFM EQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN
Sequences:
>Translated_368_residues MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAF ADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATG DINIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFM EQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN >Mature_367_residues TSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVEEFENSLMLKMNSVEGAMQAFA DPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGENRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGD INIGLDMLDGLFGKILYNKLPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRIN NLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITDVYDLYLNDAQIKQQNINSFME QWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRCDNQLPPLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41584; Mature: 41453
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVE CCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EFENSLMLKMNSVEGAMQAFADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGE HHHHHHEEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCC NRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGDINIGLDMLDGLFGKILYNK CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC LPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECEECCCHHHHHHHHHHHH NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITD CCCCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHH VYDLYLNDAQIKQQNINSFMEQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRC HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHH DNQLPPLN CCCCCCCC >Mature Secondary Structure TSRQSQKGGDSSTNIQAEQLVVNMGIDEKRAREIYQEMNLQLKKEYTHEALNIAISRVE CCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EFENSLMLKMNSVEGAMQAFADPSFQLLLVDAQKAAAATERAADYDLLSELLVHRFKKGE HHHHHHEEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHCCC NRTIRAGITRAVEIVDEISDEALLGLTVAHSVTTFVPATGDINIGLDMLDGLFGKILYNK CCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC LPNGNEWLDHLDVLNAVRVNSFGSLKKMKQYYPESLSVYVDVGIKKNSDSYSQALEILRI CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECEECCCHHHHHHHHHHHH NNLPHDLLIEHSLSDEFVRLPFSDKSRIQDTILIQKLVYNGLTHTVPVALSPVQLQAITD CCCCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHH VYDLYLNDAQIKQQNINSFMEQWEKRENLRLLRSWWDSINTSFQLTSVGKVLAHSNAQRC HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCHHHH DNQLPPLN CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA